By-5.5 Pro Phosphoramidite

Name: By-5.5 Pro Phosphoramidite
Brand: BOC Sciences
Rating: 5 (1 reviews)

Catalog Number	R10-0034
Category	Phosphoramidites
Molecular Formula	C78H93BF4N5O6P
Molecular Weight	1314.41

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Product Introduction

By-5.5 Pro Phosphoramidite is a fluorescent labeling reagent used in oligonucleotide synthesis. It contains a By-5.5 fluorophore attached to a hydroxyprolinol-based phosphoramidite moiety. The hydroxyprolinol linker provides a rigid, non-nucleosidic scaffold for efficient incorporation of the By-5.5 label at the 5' end of DNA or RNA sequences during automated solid-phase synthesis. It is commonly used in multiplex PCR, DNA sequencing, and fragment analysis applications.

Chemical Information

Chemical Information

Synonyms	Cyanine5.5 Pro Phosphoramidite tetrafluoroborate; Cyanine5.5 Phosphoramidite (hydroxyprolinol) tetrafluoroborate; Cy5.5 Pro Phosphoramidite tetrafluoroborate; 2-((1E,3E,5E)-5-(3-(6-((2S,4R)-2-((Bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-(((2-cyanoethoxy)(diisopropylamino)phosphaneyl)oxy)pyrrolidin-1-yl)-6-oxohexyl)-1,1-dimethyl-1,3-dihydro-2H-benzo[e]indol-2-ylidene)penta-1,3-dien-1-yl)-3-butyl-1,1-dimethyl-1H-benzo[e]indol-3-ium tetrafluoroborate
SMILES	FB(F)F.COC1=CC=C(C(C2=CC=CC=C2)(OC[C@@H]3C[C@H](CN3C(CCCCCN4C5=C(C(C)(/C4=C\C=C\C=C\C6=[N+](C7=C(C(C)6C)C8=C(C=CC=C8)C=C7)CCCC)C)C(C=CC=C9)=C9C=C5)=O)OP(OCCC#N)N(C(C)C)C(C)C)C(C=C%10)=CC=C%10OC)C=C1.[F-]
InChI	InChI=1S/C78H93N5O6P.BF3.FH/c1-12-13-50-80-69-47-37-58-28-22-24-32-67(58)74(69)76(6,7)71(80)34-19-15-20-35-72-77(8,9)75-68-33-25-23-29-59(68)38-48-70(75)81(72)51-26-16-21-36-73(84)82-54-66(89-90(88-52-27-49-79)83(56(2)3)57(4)5)53-63(82)55-87-78(60-30-17-14-18-31-60,61-39-43-64(85-10)44-40-61)62-41-45-65(86-11)46-42-62;2-1(3)4;/h14-15,17-20,22-25,28-35,37-48,56-57,63,66H,12-13,16,21,26-27,36,50-55H2,1-11H3;;1H/q+1;;/p-1/t63-,66+,90?;;/m0../s1
InChIKey	KEXSLYZVXUTVMM-WSYKWAHBSA-M