
dSpacer-CEP | CAS 129821-76-7
| Catalog Number | R10-0012 |
| Category | Phosphoramidites |
| Molecular Formula | C35H45N2O6P |
| Molecular Weight | 620.71 |
| Catalog Number | Size | Price | Quantity |
|---|---|---|---|
| R10-0012 | 100 mg | $329 | |
| R10-0012 | 1 g | $893 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
dSpacer is used to introduce stable abasic sites in oligonucleotides.
Chemical Information
Product Specification
Application
Chemical Information
| Synonyms | 5'-O-(4,4'-Dimethoxytrityl)-1',2'-dideoxyribose-3'-O-[(2-cyanoethyl)-(N,N-Diisopropyl)]-phosphoramidite; 1',2'-Dideoxy-5'-O-DMT-ribose 3'-CE phosphoramidite; dSpacer CE Phosphoramidite; (2R,3S)-2-((Bis(4-methoxyphenyl)(phenyl)methoxy)methyl)tetrahydrofuran-3-yl (2-cyanoethyl) diisopropylphosphoramidite; D-erythro-Pentitol, 1,4-anhydro-5-O-[bis(4-methoxyphenyl)phenylmethyl]-2-deoxy-, 3-[2-cyanoethyl N,N-bis(1-methylethyl)phosphoramidite] |
| Purity | ≥95% |
| IUPAC Name | 3-[[(2R,3S)-2-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]oxolan-3-yl]oxy-[di(propan-2-yl)amino]phosphanyl]oxypropanenitrile |
| SMILES | CC(C)N(C(C)C)P(OCCC#N)OC1CCOC1COC(C2=CC=CC=C2)(C3=CC=C(C=C3)OC)C4=CC=C(C=C4)OC |
| InChI | InChI=1S/C35H45N2O6P/c1-26(2)37(27(3)4)44(42-23-10-22-36)43-33-21-24-40-34(33)25-41-35(28-11-8-7-9-12-28,29-13-17-31(38-5)18-14-29)30-15-19-32(39-6)20-16-30/h7-9,11-20,26-27,33-34H,10,21,23-25H2,1-6H3/t33-,34+,44?/m0/s1 |
| InChIKey | XZGSDLJMHWJDHL-JUWSMZLESA-N |
| Appearance | Colorless to light yellow oily matter |
| Boiling Point | 658.6±55.0 °C at 760 mmHg |
Product Specification
| Storage | Store at -20 °C |
Application
dSpacer-CEP is a click chemistry reagent designed for bioorthogonal conjugation workflows, leveraging the widely used thiol-reactive/alkyne–azide compatibility strategies commonly paired with strain-promoted or catalyst-free click formats. The scaffold incorporates a spacer element (dSpacer) to tune distance and accessibility and a CEP functional handle that supports stable attachment to biomolecules, targeting ligands, or polymeric platforms. This combination makes dSpacer-CEP particularly relevant for constructing well-defined conjugates used in chemical biology, molecular imaging, and diagnostic reagent development, where linker length and functional group presentation strongly influence labeling efficiency and downstream assay performance.
1. Protein Labeling Workflows
dSpacer-CEP is used to install a defined reactive handle on proteins and protein-derived reagents for subsequent click-based assembly steps. Researchers in chemical biology and proteomics commonly incorporate linker spacers to improve accessibility of the conjugation site, reduce steric shielding, and maintain the performance of affinity reagents such as antibodies, nanobodies, and binding proteins. The CEP functional group enables streamlined downstream coupling into multi-component constructs, including affinity probes, reference standards, and modular labeling reagents used for assay development and analytical workflows.
2. Molecular Imaging Probes
dSpacer-CEP supports the preparation of imaging-oriented conjugates where controlled linker length is critical for maintaining probe behavior and minimizing nonspecific interactions. Molecular imaging teams use spacer-functional click reagents to build probe libraries that can be rapidly diversified by attaching different reporter moieties or targeting elements through standardized conjugation steps. The dSpacer component helps tune the spatial relationship between the biomolecular recognition element and the imaging handle, improving the reproducibility of probe construction for fluorescence-based studies, imaging reagent screening, and imaging reagent optimization.
3. Diagnostic Reagent Conjugates
dSpacer-CEP is applied in the development of diagnostic and analytical reagents that rely on robust, modular conjugation to generate consistent signal-generating conjugates. Diagnostic reagent developers use spacer-enabled click chemistry building blocks to couple capture or detection components with standardized reactive sites, facilitating batch-to-batch reproducibility in assay reagent preparation. The CEP functional handle is particularly useful for constructing multi-part diagnostic formats such as labeled binding reagents, assay controls, and reference conjugates where precise presentation of functional groups improves workflow reliability.
4. Biomaterials Surface Functionalization
dSpacer-CEP is used to functionalize biomaterial surfaces and material-associated biomolecular layers that require click-compatible attachment points for subsequent assembly. Biomaterials and materials chemistry groups employ spacer-containing click reagents to control surface density, reduce steric crowding, and preserve the accessibility of immobilized ligands. By providing a CEP-enabled conjugation handle, dSpacer-CEP helps researchers build modular surface coatings, functionalized scaffolds, and immobilized reagent platforms used in biosensing, analytical materials development, and advanced materials characterization workflows.
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