6-JOE Phosphoramidite (hydroxyprolinol), CHC protected

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6-JOE Phosphoramidite (hydroxyprolinol), CHC protected

6-JOE Phosphoramidite (hydroxyprolinol), CHC protected

Catalog Number R10-0023
Category JOE Dyes
Molecular Formula C78H89Cl2N4O16P
Molecular Weight 1440.46
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Product Introduction

6-JOE Phosphoramidite (hydroxyprolinol), CHC protected is a fluorescent labeling reagent used in oligonucleotide synthesis. It contains a 6-carboxy-4',5'-dichloro-2',7'-dimethoxyfluorescein (6-JOE) fluorophore attached to a hydroxyprolinol-based phosphoramidite moiety, with cyclohexylcarbonyl (CHC) protecting groups on the phenolic hydroxyl groups of the JOE dye. The hydroxyprolinol linker provides a rigid, non-nucleosidic scaffold, while the CHC protection enhances stability during synthesis and deprotection steps. It enables incorporation of the 6-JOE label at the 5' end of DNA sequences during automated solid-phase synthesis, and is commonly used in multiplex PCR, DNA sequencing, and fragment analysis applications.

  • Chemical Information

Chemical Information

Synonyms 6-JOE Pro Phosphoramidite; JOE phosphoramidite, 6-isomer (hydroxyprolinol), CHC protected; 6-((6-((2S,4R)-2-((Bis(4-methoxyphenyl)(phenyl)methoxy)methyl)-4-(((2-cyanoethoxy)(diisopropylamino)phosphaneyl)oxy)pyrrolidin-1-yl)-6-oxohexyl)carbamoyl)-4',5'-dichloro-2',7'-dimethoxy-3-oxo-3H-spiro[isobenzofuran-1,9'-xanthene]-3',6'-diyl dicyclohexanecarboxylate
SMILES ClC(C1=C2C3(C4=CC(C(NCCCCCC(N5[C@H](COC(C6=CC=CC=C6)(C7=CC=C(OC)C=C7)C8=CC=C(OC)C=C8)C[C@@H](OP(N(C(C)C)C(C)C)OCCC#N)C5)=O)=O)=CC=C4C(O3)=O)C(C=C9OC)=C(O1)C(Cl)=C9OC(C%10CCCCC%10)=O)=C(C(OC)=C2)OC(C%11CCCCC%11)=O
InChI InChI=1S/C78H89Cl2N4O16P/c1-48(2)84(49(3)4)101(95-41-21-39-81)100-59-43-56(47-94-77(53-26-17-11-18-27-53,54-30-34-57(90-5)35-31-54)55-32-36-58(91-6)37-33-55)83(46-59)66(85)28-19-12-20-40-82-73(86)52-29-38-60-61(42-52)78(99-76(60)89)62-44-64(92-7)71(97-74(87)50-22-13-9-14-23-50)67(79)69(62)96-70-63(78)45-65(93-8)72(68(70)80)98-75(88)51-24-15-10-16-25-51/h11,17-18,26-27,29-38,42,44-45,48-51,56,59H,9-10,12-16,19-25,28,40-41,43,46-47H2,1-8H3,(H,82,86)/t56-,59+,101?/m0/s1
InChIKey SAFJTGYBQAEHBP-CQSLGVROSA-N

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