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JOE azide, 5-isomer
| Catalog Number | F12-0001 |
| Category | JOE |
| Molecular Formula | C26H20N4Cl2O8 |
| Molecular Weight | 587.37 |
| Catalog Number | Size | Price | Quantity |
|---|---|---|---|
| F12-0001 | -- | $-- |
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Product Introduction
JOE is a fluorescent dye with the emission in yellow region of the spectrum. The fluorophore matches channel of HEX dye, another chlorinated fluorescein.JOE dye is often used in qPCR; oligo labeling can be achieved using Click chemistry. This is an azide derivative of JOE for Click chemistry, pure 5-isomer.
Chemical Information |
|
|---|---|
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | N-(3-azidopropyl)-4',5'-dichloro-3',6'-dihydroxy-2',7'-dimethoxy-3-oxospiro[2-benzofuran-1,9'-xanthene]-5-carboxamide |
| Canonical SMILES | COC1=C(C(=C2C(=C1)C3(C4=C(C=C(C=C4)C(=O)NCCCN=[N+]=[N-])C(=O)O3)C5=CC(=C(C(=C5O2)Cl)O)OC)Cl)O |
| InChI | InChI=1S/C26H20Cl2N4O8/c1-37-16-9-14-22(18(27)20(16)33)39-23-15(10-17(38-2)21(34)19(23)28)26(14)13-5-4-11(8-12(13)25(36)40-26)24(35)30-6-3-7-31-32-29/h4-5,8-10,33-34H,3,6-7H2,1-2H3,(H,30,35) |
| InChI Key | HEOCCOHXKKBACD-UHFFFAOYSA-N |
| Solubility | good in DMF, DMSO |
| Appearance | red solid |
- Product Specification
| ε, L⋅mol-1⋅cm-1 | 75000 |
| Excitation | 533 |
| Emission | 554 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Computed Properties | |
|---|---|
| XLogP3 | 5.2 |
| Hydrogen Bond Donor Count | 3 |
| Hydrogen Bond Acceptor Count | 10 |
| Rotatable Bond Count | 7 |
| Exact Mass | 586.0658190 g/mol |
| Monoisotopic Mass | 586.0658190 g/mol |
| Topological Polar Surface Area | 138Ų |
| Heavy Atom Count | 40 |
| Formal Charge | 0 |
| Complexity | 981 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
Patents
| Publication Number | Title | Priority Date |
|---|---|---|
| US-2014024137-A1 | Methods and compositions related to nucleic acid binding assays | 2012-07-11 |
| US-2014330001-A1 | Methods and compositions related to nucleic acid binding assays | 2012-07-11 |
| US-2016282357-A1 | Methods and compositions related to nucleic acid binding assays | 2012-07-11 |
| US-9017943-B2 | Methods and compositions related to nucleic acid binding assays | 2012-07-11 |
| US-9410186-B2 | Methods and compositions related to nucleic acid binding assays | 2012-07-11 |
Applications of Fluorescent Probes & Dyes
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