
TO1-Biotin | CAS 1622455-90-6
| Catalog Number | A19-0104 |
| Category | DNA Stains |
| Molecular Formula | C38H49N6O6S2 |
| Molecular Weight | 749.97 |
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Product Introduction
TO1-Biotin is the standard variety of TO dye for RNA Mango experiments.
Chemical Information
Application
Chemical Information
| Synonyms | 4-[[3-[20-[(3aS,4S,6aR)-Hexahydro-2-oxo-1H-thieno[3,4-d]imidazol-4-yl]-2,16-dioxo-6,9,12-trioxa-3,15-diazaeicos-1-yl]-2(3H)-benzothiazolylidene]methyl]-1-methylquinolinium; TO1-3PEG-Biotin |
| SMILES | O=C1NC2CSC(CCCCC(=O)NCCOCCOCCOCCNC(=O)CN3C(SC=4C=CC=CC43)=CC5=CC=[N+](C=6C=CC=CC56)C)C2N1 |
| InChI | InChI=1S/C38H48N6O6S2/c1-43-17-14-27(28-8-2-3-9-30(28)43)24-36-44(31-10-4-5-11-32(31)52-36)25-35(46)40-16-19-49-21-23-50-22-20-48-18-15-39-34(45)13-7-6-12-33-37-29(26-51-33)41-38(47)42-37/h2-5,8-11,14,17,24,29,33,37H,6-7,12-13,15-16,18-23,25-26H2,1H3,(H3-,39,40,41,42,45,46,47)/p+1/t29-,33-,37-/m0/s1 |
| InChIKey | IGBMJUATUPTMLS-FIKWBYJGSA-O |
Application
TO1-Biotin is a biotin-functionalized fluorescent dye designed for conjugation workflows that combine fluorescence readout with strong biotin-avidin/streptavidin capture. In imaging and assay development, the biotin handle enables convenient immobilization onto avidin-coated surfaces, beads, or sensor formats, while the TO1 dye provides a far-red/near-infrared fluorescence signal for tracking labeled components. This reagent is frequently used to prepare biotinylated fluorescent conjugates for molecular imaging reagent construction, fluorescence-based binding studies, and surface-tethered assay platforms.
1. Avidin Bead Labeling
TO1-Biotin is used to generate fluorescently labeled avidin/streptavidin capture reagents for binding and separation workflows. Researchers commonly incorporate the biotinylated dye onto streptavidin-coated magnetic beads to visualize binding events, monitor wash efficiency, and quantify capture of biotinylated biomolecules in fluorescence readouts. This format is particularly convenient when the experimental design benefits from a robust, noncovalent avidin-biotin linkage to assemble fluorescent probes, standards, or surface-tethered reagents.
2. Surface Immobilization Imaging
TO1-Biotin supports fluorescence microscopy and plate-based assays that require stable tethering of fluorescent material to avidin-functionalized substrates. In biomaterials and surface chemistry studies, the biotin moiety is used to anchor the dye onto streptavidin-coated glass, polymer films, or microarray surfaces, enabling spatial localization of labeled components and visualization of immobilized layers. The resulting surface-bound fluorescence is useful for tracking adsorption, monitoring coating uniformity, and validating functionalization strategies in chemical biology and materials characterization workflows.
3. Fluorescent Binding Assays
TO1-Biotin is frequently employed as a fluorescent reporter in binding assays where biotin-avidin interactions or biotinylated partners are used to define assay architecture. In research settings, the dye can be used to follow association kinetics, competitive binding, or immobilized ligand engagement by measuring fluorescence intensity changes upon incubation and wash steps. This application is common in assay development for affinity reagent screening, reagent qualification, and fluorescence-based characterization of biotinylated biomolecules and binding partners.
4. Molecular Imaging Reagent Construction
TO1-Biotin is leveraged to build multicomponent fluorescent imaging reagents that require both a fluorophore and an affinity handle. Chemical biology teams use the biotin functionality to couple the dye to avidin/streptavidin conjugates, enabling assembly of fluorescent labeling reagents for microscopy-based localization studies and fluorescence tracking of biomolecular constructs. The modular avidin-biotin coupling approach helps streamline reagent design when fluorescent tagging needs to be integrated into larger imaging or analytical workflows.
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