![{[Name]}](https://resource.bocsci.com/structure/9-acridinecarboxylic-acid-succinimidyl-ester.gif?v=2025011501)
![{[Name]}](https://resource.bocsci.com/structure/1173109-53-9.gif?v=2025011501)
![{[Name]}](https://resource.bocsci.com/structure/82855-40-1.gif?v=2025011501)
![{[Name]}](https://resource.bocsci.com/structure/57576-49-5.gif?v=2025011501)
![{[Name]}](https://resource.bocsci.com/structure/157199-56-9.gif?v=2025011501)
![{[Name]}](https://resource.bocsci.com/structure/1428126-74-2.gif?v=2025011501)
Inquiry Basket
Cyanine5 phosphoramidite
| Catalog Number | A19-0085 |
| Category | DNA Stains |
| Molecular Formula | C47H67N5ClO3P |
| Molecular Weight | 816.49 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
Cyanine5 is one of the dyes that are used in qPCR. The corresponding filter set is found on many qPCR machines.,This reactive derivative is useful for the synthesis of qPCR probes having Cyanine5 at 5'-end, the most typical location of fluorophore. This is a terminating, non-nucleoside reagent.,Amidite group in this reagent is bound to a secondary oxygen. This provides extra stability against Arbuzov rearrangement-a reaction that leads to amidite deterioration in solution in oligonucleotide synthesizer. This molecular design increases stability of the reagent, maintaining efficient coupling over longer time.
Chemical Information
Product Specification
Computed Properties
| Purity | NMR 1H, 31P, HPLC-MS (80%) |
| IUPAC Name | N-[4-[2-cyanoethoxy-[di(propan-2-yl)amino]phosphanyl]oxycyclohexyl]-6-[3,3-dimethyl-2-[5-(1,3,3-trimethylindol-1-ium-2-yl)penta-2,4-dienylidene]indol-1-yl]hexanamide;chloride |
| Canonical SMILES | CC(C)N(C(C)C)P(OCCC#N)OC1CCC(CC1)NC(=O)CCCCCN2C3=CC=CC=C3C(C2=CC=CC=CC4=[N+](C5=CC=CC=C5C4(C)C)C)(C)C.[Cl-] |
| InChI | InChI=1S/C47H66N5O3P.ClH/c1-35(2)52(36(3)4)56(54-34-20-32-48)55-38-30-28-37(29-31-38)49-45(53)27-14-11-19-33-51-42-24-18-16-22-40(42)47(7,8)44(51)26-13-10-12-25-43-46(5,6)39-21-15-17-23-41(39)50(43)9;/h10,12-13,15-18,21-26,35-38H,11,14,19-20,27-31,33-34H2,1-9H3;1H |
| InChIKey | JTFPONRIAYGAKY-UHFFFAOYSA-N |
| Appearance | Dark colored solid |
| CF260 | 0.03 |
| CF280 | 0.04 |
| Fluorescence Quantum Yield | 0.2 |
| Excitation | 646 |
| Emission | 662 |
| Storage | Storage: 12 months after receival at -20 °C in the Dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 7 |
| Rotatable Bond Count | 18 |
| Exact Mass | 815.4670057 g/mol |
| Monoisotopic Mass | 815.4670057 g/mol |
| Topological Polar Surface Area | 80.8Ų |
| Heavy Atom Count | 57 |
| Formal Charge | 0 |
| Complexity | 1460 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 1 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 3 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
Recommended Services
Recommended Articles
- Hoechst Dyes: Definition, Structure, Mechanism and Applications
- Mastering the Spectrum: A Comprehensive Guide to Cy3 and Cy5 Dyes
- Fluorescent Probes: Definition, Structure, Types and Application
- Fluorescent Dyes: Definition, Mechanism, Types and Application
- Coumarin Dyes: Definition, Structure, Benefits, Synthesis and Uses
- BODIPY Dyes: Definition, Structure, Synthesis and Uses
- Cyanine Dyes: Definition, Structure, Types and Uses
- Fluorescein Dyes: Definition, Structure, Synthesis and Uses
- Rhodamine Dyes: Definition, Structure, Uses, Excitation and Emission
- Unlocking the Power of Fluorescence Imaging: A Comprehensive Guide
- Cell Imaging: Definitions, Systems, Protocols, Dyes, and Applications
- Lipid Staining: Definition, Principles, Methods, Dyes, and Uses
- Flow Cytometry: Definition, Principles, Protocols, Dyes, and Uses
- Nucleic Acid Staining: Definition, Principles, Dyes, Procedures, and Uses
- DNA Staining: Definition, Procedures, Benefits, Dyes and Uses
- Cell Staining: Definition, Principles, Protocols, Dyes, and Uses
- Ion Imaging: Definition, Principles, Benefits, Dyes, and Uses
- Fluorescent Labeling: Definition, Principles, Types and Applications
Recommended Products
Online Inquiry
