
6-HEX NHS | CAS 2129651-79-0
| Catalog Number | A07-0047 |
| Category | RNA/DNA Labeling |
| Molecular Formula | C25H9Cl6NO9 |
| Molecular Weight | 680.06 |
| Catalog Number | Size | Price | Quantity |
|---|---|---|---|
| A07-0047 | 10 mg | $339 | |
| A07-0047 | 25 mg | $449 |
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Product Introduction
6-HEX NHS is a hexachlorofluorescein-based amine-reactive fluorophore, widely used in the labeling of biomolecules through its N-hydroxysuccinimide (NHS) ester functionality. The compound features a robust chromophore structure that enables efficient excitation and emission, making it suitable for fluorescence-based applications such as oligonucleotide labeling and protein conjugation. Its spectral properties facilitate its integration into fluorescence imaging workflows and biosensing assays, where it serves as a reliable reporter molecule.
Chemical Information
Product Specification
Application
Chemical Information
| Synonyms | 6-HEX, SE; HEX NHS ester, 6-isomer |
| IUPAC Name | 3,6-dichloro-4-(2,5-dioxopyrrolidin-1-yl)oxycarbonyl-2-(2,4,5,7-tetrachloro-3-hydroxy-6-oxoxanthen-9-yl)benzoic acid |
| SMILES | C1CC(=O)N(C1=O)OC(=O)C2=CC(=C(C(=C2Cl)C3=C4C=C(C(=O)C(=C4OC5=C(C(=C(C=C35)Cl)O)Cl)Cl)Cl)C(=O)O)Cl |
| InChI | InChI=1S/C25H9Cl6NO9/c26-9-5-8(25(39)41-32-12(33)1-2-13(32)34)17(29)16(15(9)24(37)38)14-6-3-10(27)20(35)18(30)22(6)40-23-7(14)4-11(28)21(36)19(23)31/h3-5,35H,1-2H2,(H,37,38) |
| InChIKey | WRMUHYKDIQULCR-UHFFFAOYSA-N |
| Solubility | Soluble in DMSO, DMF |
| Density | 1.96 ± 0.1 g/ml |
| Appearance | Light Orange Powder |
| Boiling Point | 861.5 ± 75.0 °C |
Product Specification
| Excitation | 533 |
| Emission | 549 |
Application
6-HEX NHS is an N-hydroxysuccinimide (NHS) ester reagent designed for efficient amine-reactive bioconjugation. It provides a short, defined spacer for coupling primary amines on proteins, peptides, and other biomolecules, enabling fluorescent labeling, affinity reagent construction, and reagent development where controlled linker length matters. The NHS-ester functionality is widely used to prepare conjugates for fluorescence-based assays, imaging workflows, and surface-immobilized biomaterials.
1. Protein Fluorescent Labeling
6-HEX NHS is used to introduce a reactive handle onto proteins and peptides prior to downstream attachment of fluorophores or reporter groups, supporting fluorescent labeling workflows in chemical biology and assay development. Researchers commonly couple 6-HEX NHS to lysine-containing biomolecules to generate amine-reactive conjugates that can be further functionalized, including for building labeled antibodies, enzyme conjugates, and protein standards for microscopy or plate-based fluorescence readouts. The hexyl spacer length provided by the reagent helps reduce steric constraints compared with very short linkers, which can be important when preserving binding or enzymatic performance in labeling-driven studies.
2. Antibody and Affinity Reagent Conjugation
6-HEX NHS supports preparation of antibody conjugates and affinity reagents used in fluorescence imaging and binding assays, where controlled attachment of labels or secondary recognition elements improves reproducibility. In practice, investigators use 6-HEX NHS to derivatize amine groups on antibodies, antibody fragments, or other affinity proteins so that subsequent coupling steps can attach dyes, haptens, or other functional moieties. This approach is frequently adopted in reagent development for flow cytometry staining panels, immunofluorescence microscopy probes, and multiplex binding assays, leveraging the amine-reactive NHS ester to create conjugates with defined linker geometry.
3. Surface and Biomaterial Functionalization
6-HEX NHS is applied in biomaterials science to covalently functionalize amine-bearing surfaces and matrices, enabling immobilization of proteins, capture ligands, and assay components. Researchers use it to create stable attachment points on polymeric supports, hydrogel surfaces, and other materials containing accessible primary amines, supporting workflows such as immobilized enzyme assays, affinity capture platforms, and fluorescence-based surface imaging studies. The hexyl spacer can help maintain accessibility of immobilized biomolecules by providing a modest distance from the surface, which is often beneficial for binding and signal generation in materials-integrated assay formats.
4. Peptide and Oligonucleotide Conjugate Preparation
6-HEX NHS is commonly used to prepare peptide conjugates and to functionalize amine-containing nucleic acid components or nucleic-acid-associated reagents when primary amines are available for coupling. In chemical biology workflows, it enables the installation of a linker that can be carried forward into fluorescent probe construction, affinity tag incorporation, or reporter conjugation for nucleic-acid analysis assays. By targeting primary amines, 6-HEX NHS supports the creation of labeled peptide reagents and conjugates used as components in fluorescence-based characterization of biomolecular interactions, including studies where modular linker length improves performance of the final conjugate.
5. Fluorescence Assay Reagent Building Blocks
6-HEX NHS is used as a coupling reagent to generate intermediate conjugates that serve as building blocks for fluorescence assay development. Teams developing fluorescence-based biosensors, labeled enzyme substrates, and assay controls often derivatize proteins or peptide reagents with 6-HEX NHS to enable consistent attachment of fluorescent reporters or other signal-generating groups in subsequent steps. This workflow is particularly useful when a defined, short aliphatic spacer is desired to balance conjugate stability and functional accessibility, supporting routine preparation of research-grade fluorescence reagents for plate assays and imaging experiments.
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