
5-VIC NHS Ester
| Catalog Number | A07-0065 |
| Category | RNA/DNA Labeling |
| Molecular Formula | C31H16Cl3NO9 |
| Molecular Weight | 652.82 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
5-VIC NHS Ester is an N-hydroxysuccinimide (NHS) ester derivative of the VIC dye used in DNA and RNA oligonucleotides, particularly in fluorescent labeling for applications like PCR and qPCR.
Chemical Information
Application
Chemical Information
| IUPAC Name | 2,5-dioxopyrrolidin-1-yl 2',4,7-trichloro-3',6'-dihydroxy-3-oxo-7'-phenyl-3H-spiro[isobenzofuran-1,9'-xanthene]-6-carboxylate |
Application
5-VIC NHS Ester is an NHS ester-activated vinyl dye designed for efficient covalent labeling of primary amines under standard bioconjugation conditions. As a fluorescein-compatible green spectral dye format, it is commonly used to generate fluorescent conjugates for tracking biomolecules, building labeled probes, and preparing reagents for fluorescence readouts in microscopy and flow cytometry workflows. The reactive N-hydroxysuccinimide ester enables straightforward attachment to lysine residues on proteins and peptides, as well as amino-modified nucleic acids and other amine-bearing surfaces.
1. Protein And Peptide Labeling
5-VIC NHS Ester is frequently used by protein engineering and chemical biology groups to prepare fluorescently labeled antibodies, enzymes, and affinity reagents for downstream imaging and assay development. After conjugation to lysine-rich proteins or amine-containing peptides, the resulting fluorescent conjugates support localization studies in fluorescence microscopy and quantitative readouts in plate-based fluorescence assays. Researchers also use 5-VIC NHS Ester labeling to generate fluorescent standards for method development, including calibration of labeling efficiency and optimization of labeling density for specific imaging or detection formats.
2. Oligonucleotide Conjugation
5-VIC NHS Ester is applied in nucleic acid labeling workflows where amino-modified oligonucleotides are available, enabling covalent attachment of the dye to support fluorescence-based nucleic acid analysis. Labeled oligos prepared with 5-VIC NHS Ester are used in hybridization experiments, probe construction, and nucleic acid tracing studies where a green-emitting reporter is advantageous for compatibility with common filter sets and fluorescence instrumentation. This labeling approach is also used to generate fluorescently tagged primers or probes for monitoring binding and processing steps in nucleic acid workflows.
3. Flow Cytometry Staining Reagents
5-VIC NHS Ester is commonly leveraged to build fluorescent staining reagents for flow cytometry when a green-channel-compatible dye is required. Conjugates prepared from amine-reactive labeling of proteins such as antibodies or binding ligands enable cell-surface or soluble target tracking in multiparameter cytometry panels. In practice, researchers use 5-VIC NHS Ester-derived conjugates to quantify binding by fluorescence intensity and to support gating strategies for labeled populations, including optimization of staining protocols and panel design where spectral overlap management is required.
4. Fluorescence Microscopy Tracing
5-VIC NHS Ester is used to generate fluorescent labeling reagents for cellular and biomolecular tracing experiments in fluorescence microscopy. Labeled proteins, peptides, and other amine-bearing biomolecules can be introduced into imaging workflows to visualize distribution, uptake, or association with experimental components, depending on how the conjugate is incorporated into the study design. Because the dye is introduced via an NHS ester handle, it is particularly convenient for preparing microscopy-compatible conjugates from lysine-containing targets without requiring site-specific engineering.
5. Biomaterial And Surface Functionalization
5-VIC NHS Ester is applied in biomaterials science to fluorescently tag amine-functional surfaces and matrices for visualization of material interfaces and reagent distribution. Researchers use it to label amine-containing polymers, coatings, and hydrogel components so that fluorescent microscopy and other fluorescence-based readouts can track surface coverage, adsorption behavior, or spatial organization. This approach is also used to create fluorescently marked materials for quality control during materials development and for studying how functionalized surfaces interact with labeled biomolecules.
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