
Aldehyde Reactive Probe (trifluoroacetate salt) | CAS 627090-10-2
| Catalog Number | A19-0039 |
| Category | DNA Stains |
| Molecular Formula | C14H22F3N5O6S |
| Molecular Weight | 445.41 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
Aldehyde Reactive Probe (trifluoroacetate salt) is a specialized labeling reagent designed for the selective targeting of aldehyde groups in biomolecules. This probe features a reactive moiety that can form covalent bonds with aldehyde functionalities, making it suitable for applications in fluorescence microscopy and biosensing assays. The trifluoroacetate salt form enhances its solubility and stability, facilitating its incorporation into complex biological systems for precise imaging and detection workflows.
Chemical Information
Application
Computed Properties
Chemical Information
| Synonyms | N-(Aminooxyacetyl)-N'-(D-biotinoyl)hydrazine, trifluoroacetic acid salt; ARP |
| IUPAC Name | 5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]-N'-(2-aminooxyacetyl)pentanehydrazide;2,2,2-trifluoroacetic acid |
| SMILES | C1C2C(C(S1)CCCCC(=O)NNC(=O)CON)NC(=O)N2.C(=O)(C(F)(F)F)O |
| InChI | InChI=1S/C12H21N5O4S.C2HF3O2/c13-21-5-10(19)17-16-9(18)4-2-1-3-8-11-7(6-22-8)14-12(20)15-11;3-2(4,5)1(6)7/h7-8,11H,1-6,13H2,(H,16,18)(H,17,19)(H2,14,15,20);(H,6,7)/t7-,8-,11-;/m0./s1 |
| InChIKey | YJYRTJQOEOYKFD-AEXHUXLESA-N |
| Appearance | White Solid |
Application
Aldehyde Reactive Probe (trifluoroacetate salt) is a carbonyl-reactive labeling reagent designed for covalent tagging of aldehyde-containing biomolecules and biomaterial surfaces. In fluorescence-based workflows, it is commonly used to visualize and quantify aldehyde groups introduced by oxidative processing, glyco-oxidation, lipid peroxidation, or periodate oxidation. The probe's established use in aldehyde mapping makes it a practical tool for studying chemical modifications in proteins, carbohydrates, and complex biological matrices.
1. Aldehyde Mapping In Proteins
Aldehyde Reactive Probe (trifluoroacetate salt) is frequently used in protein chemistry and chemical biology to label aldehyde-bearing residues generated during oxidative stress studies or controlled carbohydrate oxidation. Researchers apply the probe in fluorescence labeling workflows to monitor the distribution of carbonyl modifications across protein samples, including complex lysates where multiple oxidation states may be present. The resulting fluorescent signal supports downstream analyses such as gel-based readouts, imaging of labeled protein bands, and comparative quantification between treated and control conditions.
2. Glycan And Carbohydrate Labeling
Aldehyde Reactive Probe (trifluoroacetate salt) supports glyco-oxidation and carbohydrate modification studies where aldehyde groups are introduced to glycans for subsequent fluorescent tagging. In glycobiology workflows, investigators use the probe to track oxidation efficiency and to compare relative labeling across different sample preparations, including purified glycoproteins and carbohydrate-rich fractions. This application is particularly useful when researchers need a robust readout of aldehyde formation prior to further conjugation steps or analytical characterization.
3. Biomaterial Surface Carbonyl Assays
Aldehyde Reactive Probe (trifluoroacetate salt) is used to evaluate aldehyde functionality on biomaterial surfaces and polymer coatings after oxidative or chemical treatments. Materials scientists and biomaterials researchers incorporate the probe into surface labeling protocols to visualize where carbonyl groups are present and to compare relative surface modification across batches or processing conditions. Fluorescence readouts from labeled surfaces can be used to guide material optimization for subsequent functionalization strategies that depend on aldehyde availability.
4. Lipid Peroxidation Carbonyl Readouts
Aldehyde Reactive Probe (trifluoroacetate salt) is applied in lipid oxidation studies to detect aldehyde products formed during lipid peroxidation and related oxidative processes. Researchers use the probe to generate fluorescence-based readouts that reflect carbonyl formation in lipid-containing samples such as liposomes, membrane fractions, or lipid extracts. This labeling approach is commonly integrated into comparative experiments to assess oxidative burden and to evaluate how formulation or experimental conditions influence aldehyde generation.
Computed Properties
| Hydrogen Bond Donor Count | 6 |
| Hydrogen Bond Acceptor Count | 11 |
| Rotatable Bond Count | 7 |
| Exact Mass | 445.12428910 g/mol |
| Monoisotopic Mass | 445.12428910 g/mol |
| Topological Polar Surface Area | 197Ų |
| Heavy Atom Count | 29 |
| Formal Charge | 0 |
| Complexity | 519 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 3 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
Recommended Services
Recommended Articles
- Hoechst Dyes: Definition, Structure, Mechanism and Applications
- Mastering the Spectrum: A Comprehensive Guide to Cy3 and Cy5 Dyes
- Fluorescent Probes: Definition, Structure, Types and Application
- Fluorescent Dyes: Definition, Mechanism, Types and Application
- Coumarin Dyes: Definition, Structure, Benefits, Synthesis and Uses
- Unlocking the Power of Fluorescence Imaging: A Comprehensive Guide
- Cell Imaging: Definitions, Systems, Protocols, Dyes, and Applications
- Lipid Staining: Definition, Principles, Methods, Dyes, and Uses
- Flow Cytometry: Definition, Principles, Protocols, Dyes, and Uses
- Nucleic Acid Staining: Definition, Principles, Dyes, Procedures, and Uses
Recommended Products
Online Inquiry