
Gem-Atto-680
| Catalog Number | F10-0171 |
| Category | ATTO Dyes |
| Molecular Formula | C47H60F2N10O12S |
| Molecular Weight | 1027.11 |
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Product Introduction
Gem-Atto-680 is a fluorescent dye known for its robust chromophore structure, which enables stable and intense fluorescence emission in the near-infrared region. With its amine-reactive functionality, Gem-Atto-680 is commonly used for protein labeling, facilitating conjugation through stable covalent bonds. This dye is often incorporated into fluorescence microscopy and flow cytometry workflows, where its spectral properties support detailed bioimaging and molecular tracking applications.
Chemical Information
Application
Chemical Information
| IUPAC Name | (11-(1-(4-(((1-((2R,4R,5R)-3,3-difluoro-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-2-oxo-1,2-dihydropyrimidin-4-yl)amino)methyl)-1H-1,2,3-triazol-1-yl)-13-oxo-3,6,9-trioxa-12-azahexadecan-16-yl)-1-ethyl-10,10-dimethyl-3,4,10,11-tetrahydro-2H-dipyrido[3,2-b:2',3'-i]phenoxazin-1-ium-8-yl)methanesulfonate |
| InChI | InChI=1S/C47H60F2N10O12S/c1-4-56-11-5-7-30-21-34-38(23-36(30)56)70-39-24-37-33(22-35(39)52-34)31(29-72(64,65)66)25-46(2,3)59(37)12-6-8-42(61)50-10-15-67-17-19-69-20-18-68-16-14-57-27-32(54-55-57)26-51-41-9-13-58(45(63)53-41)44-47(48,49)43(62)40(28-60)71-44/h9,13,21-25,27,40,43-44,60,62H,4-8,10-12,14-20,26,28-29H2,1-3H3,(H2-,50,51,53,61,63,64,65,66)/t40-,43-,44-/m1/s1 |
| InChIKey | OTOKGFGSIYHNKK-QSBCFWLISA-N |
| Appearance | Blue Solid |
Application
Gem-Atto-680 is a far-red fluorescent dye designed for robust fluorescence labeling workflows where low background and bright emission in the red spectral window are advantageous. Its reactive handle enables conjugation to biomolecules and polymers, supporting microscopy and fluorescence-based readouts. In typical research settings, Gem-Atto-680 is selected for multicolor experiments and imaging assays that benefit from reduced autofluorescence compared with visible dyes.
1. Fluorescent Bioconjugation
Gem-Atto-680 is used by chemical biology and bioconjugation laboratories to prepare fluorescently labeled proteins, peptides, and other biomolecular conjugates for downstream imaging and assay development. Researchers incorporate the dye into labeling strategies to generate stable conjugates for tracking biomolecule distribution in solution and on surfaces, including immobilized affinity reagents and labeled binding partners used in fluorescence workflows. The far-red emission of Gem-Atto-680 helps reduce spectral overlap with common green and orange channels, making it a practical choice for multicolor labeling panels.
2. Fluorescence Microscopy Imaging
Gem-Atto-680 supports fluorescence microscopy applications where far-red detection improves contrast in complex biological samples. Microscopy users employ dye-labeled biomolecules as molecular imaging reagents to visualize binding to targets, monitor localization patterns, and map fluorescent signals in fixed or prepared samples. Its emission in the deep red region aligns well with standard fluorescence microscope filter sets used for far-red channels, enabling compatibility with established imaging instrumentation and multichannel acquisition strategies.
3. Flow Cytometry Labeling
Gem-Atto-680 is frequently selected for flow cytometry dye conjugates used to quantify fluorescent labeling on cell-associated targets in research workflows. By preparing fluorescent conjugates with the appropriate reactive chemistry, users generate reagents for staining panels that read out as far-red fluorescence, which can help separate labeled populations from background fluorescence in heterogeneous samples. This positioning is especially common in assay development and immunoassay-style workflows where fluorophore choice is driven by spectral separation and consistent signal reporting across instrument channels.
4. Fluorescence Bioassay Development
Gem-Atto-680 is applied in fluorescence-based bioassays where far-red readout is used to monitor binding events, reagent incorporation, or labeled analyte behavior in plate formats. Assay developers use Gem-Atto-680 conjugates to construct fluorescence tracing reagents for screening and characterization of biomolecular interactions, including workflows that require red-shifted emission to mitigate interference from sample autofluorescence. The dye's conjugation capability supports rapid generation of assay-specific labeled reagents for method development in molecular imaging and analytical biology labs.
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