
CY5 triethylamine salt
| Catalog Number | A17-0187 |
| Category | Cyanine5 |
| Molecular Formula | C39H55N3O8S2 |
| Molecular Weight | 758 |
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Product Introduction
CY5 triethylamine salt is a fluorescent probe that can be used for the detection of cell nuclei and mitochondria.
Chemical Information
Product Specification
Application
Chemical Information
| Related CAS | 146368-11-8 (free base) |
| Purity | >95.0% |
| IUPAC Name | (2E)-2-[(2E,4E)-5-[1-(5-carboxypentyl)-3,3-dimethyl-5-sulfoindol-1-ium-2-yl]penta-2,4-dienylidene]-1-ethyl-3,3-dimethylindole-5-sulfonate;N,N-diethylethanamine |
| SMILES | CCN1C2=C(C=C(C=C2)S(=O)(=O)[O-])C(C1=CC=CC=CC3=[N+](C4=C(C3(C)C)C=C(C=C4)S(=O)(=O)O)CCCCCC(=O)O)(C)C.CCN(CC)CC |
| InChI | InChI=1S/C33H40N2O8S2.C6H15N/c1-6-34-27-18-16-23(44(38,39)40)21-25(27)32(2,3)29(34)13-9-7-10-14-30-33(4,5)26-22-24(45(41,42)43)17-19-28(26)35(30)20-12-8-11-15-31(36)37;1-4-7(5-2)6-3/h7,9-10,13-14,16-19,21-22H,6,8,11-12,15,20H2,1-5H3,(H2-,36,37,38,39,40,41,42,43);4-6H2,1-3H3 |
| InChIKey | VSINJOOHCKRFTE-UHFFFAOYSA-N |
| Solubility | Soluble in DMSO |
| Appearance | Solid |
Product Specification
| Storage | Store at -20°C |
Application
CY5 triethylamine salt is a cyanine-based fluorescent dye supplied as a triethylamine salt, commonly used to generate bright, water-compatible labeling reagents for fluorescence imaging workflows. Its reactive dye form enables attachment to biomolecules and polymers through standard dye-conjugation chemistries, supporting fluorescence readouts in microscopy and assay development where a red-emitting fluorophore is advantageous.
1. Fluorescent Bioconjugation
CY5 triethylamine salt is frequently used by chemical biology and bioconjugation teams to prepare fluorescent conjugates for proteins, peptides, and other research biomolecules. In labeling workflows, the dye's cyanine chromophore provides strong red fluorescence for tracking conjugate distribution, monitoring labeling efficiency during reagent development, and supporting downstream assays that rely on fluorescence intensity readout.
2. Fluorescence Microscopy Imaging
CY5 triethylamine salt is used in fluorescence microscopy experiments where red-channel imaging helps reduce spectral overlap with common green fluorophores. Researchers incorporate CY5-labeled antibodies, lectins, or polymeric probes to visualize cellular and biomaterial-associated structures, and to follow labeling patterns in fixed-sample imaging studies and fluorescence-based localization experiments.
3. Flow Cytometry Labeling
CY5 triethylamine salt supports fluorescence labeling strategies for flow cytometry panels that include red-emitting dyes. In instrument-based cell analysis workflows, CY5-conjugated targeting reagents are used to quantify binding of fluorescent probes to cell-associated targets, characterize staining distributions, and enable multiplex experimental designs where excitation and emission separation from other channel fluorophores is required.
4. Fluorescent Assay Development
CY5 triethylamine salt is widely applied in fluorescence assay development for generating labeled reagents used in binding and detection formats. Assay developers use CY5 conjugates as fluorescent tags in plate-based workflows, including studies that require stable, red fluorescence for signal generation and readout during optimization of probe concentration, labeling conditions, and assay reagent performance.
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