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5-(tetrahydro-2H-pyran-2-yloxy)pent-3-yn-1-PEG4-azide
| Catalog Number | R14-0107 |
| Category | Azides |
| Molecular Formula | C18H31N3O6 |
| Molecular Weight | 385.5 |
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Product Introduction
5-(tetrahydro-2H-pyran-2-yloxy)pent-3-yn-1-PEG4-azide
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | 95% |
| IUPAC Name | 2-[5-[2-[2-[2-(2-azidoethoxy)ethoxy]ethoxy]ethoxy]pent-2-ynoxy]oxane |
| SMILES | C1CCOC(C1)OCC#CCCOCCOCCOCCOCCN=[N+]=[N-] |
| InChI | InChI=1S/C18H31N3O6/c19-21-20-7-11-23-13-15-25-17-16-24-14-12-22-8-3-1-4-9-26-18-6-2-5-10-27-18/h18H,2-3,5-17H2 |
| InChIKey | NLPVDZABDQLAPL-UHFFFAOYSA-N |
Product Specification
| Storage | -20 °C |
Application
5-(tetrahydro-2H-pyran-2-yloxy)pent-3-yn-1-PEG4-azide is a PEGylated azide-containing click chemistry reagent designed for copper-free and/or copper-mediated azide–alkyne cycloaddition workflows in chemical biology and materials research. The structure combines a terminal azide handle with a propargyl-linked scaffold and a tetrahydro-2H-pyran-2-yloxy substituent, providing a hydrophilic PEG4 spacer that helps maintain solubility and spacing between biomolecules or surfaces. This reagent is commonly used to install azide functionality on probes, biomolecule conjugates, and polymeric materials where controlled attachment and modular downstream labeling are required.
1. Biomolecule Conjugation
5-(tetrahydro-2H-pyran-2-yloxy)pent-3-yn-1-PEG4-azide is used as an azide-bearing linker to generate modular conjugates for protein, peptide, and nucleic-acid labeling platforms. Researchers incorporate the PEG4 spacer to reduce steric crowding and to improve the accessibility of the azide for subsequent click coupling to complementary alkyne partners, enabling efficient assembly of multi-component bioconjugates such as affinity probes, tracking reagents, and assay components. The tetrahydro-2H-pyran-2-yloxy-bearing scaffold supports flexible attachment strategies in labeling workflows where solubility and linker length are important for consistent conjugation outcomes.
2. Surface Functionalization
5-(tetrahydro-2H-pyran-2-yloxy)pent-3-yn-1-PEG4-azide is well suited for introducing azide groups onto polymer-coated surfaces, nanoparticles, and biomaterial interfaces that will later be decorated with alkyne-functional ligands. In materials and diagnostic reagent development, the PEG4 segment helps mitigate nonspecific interactions and promotes uniform presentation of reactive handles, which is valuable for reproducible surface labeling density and for maintaining accessibility of the click handle after immobilization. This makes the reagent useful for constructing patterned or batch-processed functional materials where azide–alkyne click chemistry provides a robust route to attach fluorescent tags, affinity moieties, or other surface-bound reporters.
3. Molecular Imaging Probe Building
5-(tetrahydro-2H-pyran-2-yloxy)pent-3-yn-1-PEG4-azide supports the rapid assembly of imaging and detection probes that rely on modular coupling to alkyne-bearing reporter groups. Chemical biology teams use azide–alkyne click chemistry to exchange or tune probe components without redesigning the entire conjugate, which accelerates development of fluorescent, luminescent, or other signal-generating probe architectures used in research workflows. The PEG4 spacer is particularly helpful when constructing multi-functional probes where maintaining distance between the targeting or binding element and the reporter improves labeling consistency and reduces aggregation tendencies during probe preparation.
4. Diagnostic Reagent Labeling
5-(tetrahydro-2H-pyran-2-yloxy)pent-3-yn-1-PEG4-azide is applied in the preparation of labeled diagnostic reagents and assay-building blocks that require reliable, orthogonal attachment chemistry. By providing a stable azide handle separated by a hydrophilic PEG4 linker, the reagent enables downstream coupling to alkyne-functional reporters used in assay formats such as labeling of capture reagents, signal conjugates, and multiplexing components. This approach is frequently adopted in reagent manufacturing and research laboratories because it supports consistent conjugation workflows and straightforward interchange of reporter modules during assay optimization and platform scaling.
Computed Properties
| XLogP3 | 1.8 |
| Hydrogen Bond Donor Count | 0 |
| Hydrogen Bond Acceptor Count | 8 |
| Rotatable Bond Count | 16 |
| Exact Mass | 385.22128572 g/mol |
| Monoisotopic Mass | 385.22128572 g/mol |
| Topological Polar Surface Area | 69.7Ų |
| Heavy Atom Count | 27 |
| Formal Charge | 0 |
| Complexity | 459 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 1 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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