
DND-167
| Catalog Number | A03-0015 |
| Category | pH Indicators |
| Molecular Formula | C24H28N2O2 |
| Molecular Weight | 376.49 |
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Product Introduction
DND-167 is a cell-permeable weak base that selectively accumulates in acidic vesicles after being protonated. DND-167 is used as a pH indicator. It has weak fluorescence at neutral pH but become much brighter at the blue region of spectra at pH ~3.0. An excitation/emission maxima of the dye are 370 and 425 nm, respectively.
Chemical Information
Application
Chemical Information
| Synonyms | DND-167 dye; LysoSensor Blue DND-167; 4,4'-(anthracene-9,10-diyldimethanediyl)dimorpholine |
| IUPAC Name | 4-[[10-(morpholin-4-ylmethyl)anthracen-9-yl]methyl]morpholine |
| SMILES | C1COCCN1CC2=C3C=CC=CC3=C(C4=CC=CC=C42)CN5CCOCC5 |
| InChI | InChI=1S/C24H28N2O2/c1-2-6-20-19(5-1)23(17-25-9-13-27-14-10-25)21-7-3-4-8-22(21)24(20)18-26-11-15-28-16-12-26/h1-8H,9-18H2 |
| InChIKey | C1COCCN1CC2=C3C=CC=CC3=C(C4=CC=CC=C42)CN5CCOCC5 |
| Appearance | Yellowish Solution |
Application
DND-167 is a fluorescent probe designed for nucleic-acid-centric fluorescence readouts, leveraging a dye architecture that supports incorporation into oligonucleotide workflows and fluorescence-based monitoring in assay formats. In practical use, DND-167 is selected when researchers need a robust fluorescent labeling element for constructing nucleic-acid probes and signal-controlled hybridization or amplification assays, where the probe's optical behavior is read on standard fluorescence instrumentation.
1. Nucleic Acid Hybridization Probes
DND-167 is used in fluorescence-based nucleic acid hybridization experiments, where it serves as a fluorescent reporter element in oligonucleotide probes that report target binding through changes in fluorescence output. Researchers commonly incorporate DND-167 into probe designs for monitoring hybrid formation in solution or on assay platforms, supporting workflows such as target-dependent fluorescence readouts in binding studies and assay development. This labeling strategy is frequently applied in molecular diagnostics research settings focused on nucleic-acid detection chemistry, where the probe's fluorescent response provides a measurable signal tied to hybridization behavior.
2. Molecular Beacon and Hairpin Assays
DND-167 is leveraged in molecular beacon-style constructs and related hairpin probe formats that rely on fluorescence switching to indicate target recognition. In these applications, DND-167 is positioned as the fluorescent component of an oligonucleotide reporter system, enabling real-time monitoring of binding events when the probe transitions between conformations upon target interaction. Teams developing fluorescence assays for nucleic-acid targets use DND-167 to build reporter oligos that integrate with common plate readers and fluorescence optics, streamlining assay prototyping for signal-on or signal-change readouts.
3. Fluorescent Oligonucleotide Labeling
DND-167 is applied as a fluorescent labeling reagent for preparing labeled oligonucleotides used in downstream fluorescence workflows, including probe libraries and assay-specific reporter strands. Molecular biology and chemical biology groups use DND-167-labeled oligos to track hybridization behavior, validate probe performance in binding experiments, and support fluorescence imaging or readout development where fluorescently tagged nucleic acids are required. This approach is also used in method development for nucleic-acid assays, where consistent fluorescent labeling of oligonucleotide components is essential for reproducible fluorescence measurements across experiments.
4. Real-Time Amplification Reporter Systems
DND-167 is incorporated into fluorescence-based nucleic-acid amplification assay development as a reporter element for monitoring amplification-related fluorescence changes. In research and industrial assay development workflows, DND-167-labeled oligonucleotides are used to generate measurable fluorescence signals that correlate with nucleic-acid target amplification steps in real-time formats. This makes DND-167 relevant to teams building and optimizing fluorescence readout chemistries for nucleic-acid analysis using standard real-time fluorescence instrumentation.
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