Pyronin Y

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Pyronin Y

Pyronin Y | 92-32-0

Catalog Number A19-0042
Category DNA Stains
Molecular Formula C17H19ClN2O
Molecular Weight 302.8
Catalog Number Size Price Quantity
A19-0042 -- $--

Product Introduction

Pyronin Y is a fluorescent probe that stains double stranded RNA in living or fixed cells as well as in tissues. It has been shown to accumulate in the mitochondria of viable cells.

Chemical Information

Synonyms Pyronine Y; 3,6-bis(dimethylamino)-xanthylium, monochloride
IUPAC Name [6-(dimethylamino)xanthen-3-ylidene]-dimethylazanium;chloride
Canonical SMILES CN(C)C1=CC2=C(C=C1)C=C3C=CC(=[N+](C)C)C=C3O2.[Cl-]
InChI InChI=1S/C17H19N2O.ClH/c1-18(2)14-7-5-12-9-13-6-8-15(19(3)4)11-17(13)20-16(12)10-14;/h5-11H,1-4H3;1H/q+1;/p-1
InChI Key INCIMLINXXICKS-UHFFFAOYSA-M
Solubility Soluble in DMSO.
Appearance Solid Powder
  • Product Specification
  • Application
Excitation 540-550 nm
Emission 560-580 nm
Storage Store at -20°C
Signal Warning
GHS Hazard Statements H341 (100%): Suspected of causing genetic defects [Warning Germ cell mutagenicity]
Precautionary Statement Codes P203, P281, P318, P405, and P501 (The corresponding statement to each P-code can be found at the GHS Classification page.)

Pyronin Y is a cationic dye commonly used in various scientific and clinical applications. Here are some key applications of Pyronin Y:

Nucleic Acid Staining: Pyronin Y is extensively used for staining RNA in cells and tissues. It selectively binds to RNA, allowing researchers to visualize and quantify RNA content under a microscope. This is particularly useful in histology and cytology for studying cell cycle dynamics and differentiation processes.

Flow Cytometry: In flow cytometry, Pyronin Y is employed to distinguish between quiescent and actively cycling cells. When used in combination with other DNA-binding dyes, it enables the identification of cells in different phases of the cell cycle. This information is critical for cancer research and cell cycle studies.

Bacterial Viability Testing: Pyronin Y can be utilized to assess bacterial viability by differentiating between live and dead cells. Live cells retain Pyronin Y, appearing red, whereas dead cells do not, making it possible to quickly evaluate the efficacy of antimicrobial treatments. This application is valuable in microbiological diagnostics and antibiotic testing.

Transcriptional Activity Measurement: Pyronin Y is also used to measure transcriptional activity in living cells. By staining RNA-rich regions, it reflects the levels of transcriptional activity, providing insights into gene expression patterns. This is particularly helpful in understanding cellular responses to different environmental conditions and treatments.

Computed Properties

Hydrogen Bond Donor Count 0
Hydrogen Bond Acceptor Count 3
Rotatable Bond Count 1
Exact Mass 302.1185909 g/mol
Monoisotopic Mass 302.1185909 g/mol
Topological Polar Surface Area 15.5Ų
Heavy Atom Count 21
Formal Charge 0
Complexity 480
Isotope Atom Count 0
Defined Atom Stereocenter Count 0
Undefined Atom Stereocenter Count 0
Defined Bond Stereocenter Count 0
Undefined Bond Stereocenter Count 0
Covalently-Bonded Unit Count 2
Compound Is Canonicalized Yes

Patents

Publication NumberTitlePriority Date
CN-114716357-A A kind of alkyl substituted chalcogenide and preparation method thereof 2022-05-19
CN-217809433-U An optical system of a PCR fluorescence detector and a PCR fluorescence detector 2022-04-22
CN-114894586-A A kind of compound type super-living S staining solution with reduced interference 2022-03-18
CN-114216885-B A kind of fluorescence detection method of sulfide ion and its application 2021-11-18
US-11512342-B1 Compositions and methods for detecting pyrophosphate products of enzyme reactions using pyridylazoaniline dyes 2021-11-01
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