9-Amino-6-chloro-2-methoxyacridine

What We Offer

9-Amino-6-chloro-2-methoxyacridine

9-Amino-6-chloro-2-methoxyacridine | 3548-09-2

Catalog Number A19-0004
Category DNA Stains
Molecular Formula C14H11ClN2O
Molecular Weight 258.7
Catalog Number Size Price Quantity
A19-0004 -- $--

Product Introduction

9-Amino-6-chloro-2-methoxyacridine (ACMA) is a cell-permeable fluorescent probe for labeling DNA with selectivity for poly(dA-dT) sequences. ACMA fluorescence is quenched when a pH gradient is established, a property that has been utilized in animal- and plant-based studies. It also inhibits acetylcholinesterase with a Ki value of 49 nM.

Chemical Information

Synonyms ACMA; 6-chloro-2-methoxy-9-acridinamine
Purity ≥98%
IUPAC Name 6-chloro-2-methoxyacridin-9-amine
Canonical SMILES COC1=CC2=C(C3=C(C=C(C=C3)Cl)N=C2C=C1)N
InChI InChI=1S/C14H11ClN2O/c1-18-9-3-5-12-11(7-9)14(16)10-4-2-8(15)6-13(10)17-12/h2-7H,1H3,(H2,16,17)
InChI Key IHHSSHCBRVYGJX-UHFFFAOYSA-N
Appearance Solid Powder
  • Product Specification
  • Application
Excitation 411 nm
Emission 475 nm
Storage Store at -20°C
Signal Warning
GHS Hazard Statements H315 (100%): Causes skin irritation [Warning Skin corrosion/irritation] H319 (100%): Causes serious eye irritation [Warning Serious eye damage/eye irritation] H335 (100%): May cause respiratory irritation [Warning Specific target organ toxicity, single exposure; Respiratory tract irritation] H351 (100%): Suspected of causing cancer [Warning Carcinogenicity]
Precautionary Statement Codes P203, P261, P264, P264+P265, P271, P280, P302+P352, P304+P340, P305+P351+P338, P318, P319, P321, P332+P317, P337+P317, P362+P364, P403+P233, P405, and P501 (The corresponding statement to each P-code can be found at the GHS Classification page.)

9-Amino-6-chloro-2-methoxyacridine is an organic compound that belongs to the acridine family, characterized by a fusion of three benzene rings comprising a nitrogen-containing heterocyclic core. This particular molecule features three substituents: an amino group at the ninth position, a chloro group at the sixth, and a methoxy group at the second position on the acridine scaffold. These variations confer specific chemical properties that distinguish it from other acridine derivatives, such as altered solubility, reactivity, and biological activity. Its structural complexity and functional groups make it a compound of interest for various scientific and industrial applications.

One key application of 9-Amino-6-chloro-2-methoxyacridine is in the field of fluorescent probes. Due to the acridine moiety’s inherent fluorescent properties, compounds like this are utilized in biochemical assays to detect the presence of biomolecules such as nucleic acids. The 6-chloro and 2-methoxy substitutions can affect the wavelength and intensity of the emitted fluorescence, thus aiding in the fine-tuning of these properties for specific assay requirements. Such fluorescent probes are crucial in diagnostic techniques and in the monitoring of molecular interactions in research and medical settings.

Another significant use of this compound is in pharmaceuticals, particularly as a scaffold for synthesizing antimalarial and antibacterial agents. Acridine derivatives have shown potential in disrupting the processes of certain pathogens, and the specific substitutions in 9-Amino-6-chloro-2-methoxyacridine could enhance its binding efficiency or selectivity toward biological targets. Researchers explore this and similar compounds for the development of new medications that could be more effective than current treatments, especially against drug-resistant strains.

In the realm of materials science, 9-Amino-6-chloro-2-methoxyacridine may be used in the development of organic semiconductors. Organic compounds with conjugated systems, like acridines, can conduct electricity under certain conditions and are used in the production of devices such as organic light-emitting diodes (OLEDs) and thin-film transistors. The compound’s particular electronic and structural properties can be advantageous in these technologies, potentially offering improvements in efficiency and cost-effectiveness over traditional materials.

Finally, this acridine derivative finds applications in analytical chemistry, specifically in chromatography as part of complex detection systems. The compound may act as a stationary phase surface modifier in various chromatography techniques. Its unique structure can interact differently with distinct analytes, allowing for the improved separation and detection of complex mixtures. This application is particularly useful in laboratories processing natural product extracts or conducting detailed chemical analyses for research and industrial quality control.

Computed Properties

XLogP3 3.4
Hydrogen Bond Donor Count 1
Hydrogen Bond Acceptor Count 3
Rotatable Bond Count 1
Exact Mass 258.0559907 g/mol
Monoisotopic Mass 258.0559907 g/mol
Topological Polar Surface Area 48.1Ų
Heavy Atom Count 18
Formal Charge 0
Complexity 302
Isotope Atom Count 0
Defined Atom Stereocenter Count 0
Undefined Atom Stereocenter Count 0
Defined Bond Stereocenter Count 0
Undefined Bond Stereocenter Count 0
Covalently-Bonded Unit Count 1
Compound Is Canonicalized Yes

Literatures

PMIDPublication DateTitleJournal
23123248 2013-03-25 Inhibition of human carboxylesterases hCE1 and hiCE by cholinesterase inhibitors Chemico-biological interactions
22362183 2012-04-07 The mode of binding ACMA-DNA relies on the base-pair nature Organic & biomolecular chemistry
21971327 2011-11-21 ACMA (9-amino-6-chloro-2-methoxy acridine) forms three complexes in the presence of DNA Physical chemistry chemical physics : PCCP
21926988 2011-09-18 Bcl-xL regulates metabolic efficiency of neurons through interaction with the mitochondrial F1FO ATP synthase Nature cell biology
21619897 2011-08-01 Acridine derivatives as anti-BVDV agents Antiviral research

Patents

Publication NumberTitlePriority Date
CN-114333062-B Person Re-identification Model Training Method Based on Heterogeneous Dual Network and Feature Consistency 2021-12-31
KR-20220169639-A Rapid molecular diagnosis system for on-site diagnosis for new corona 19 virus quarantine 2021-06-21
CN-113499452-A A kind of poly-N-vinyl caprolactam nanogel loaded with gold and manganese dioxide nanoparticles and its preparation and application 2021-06-11
CN-113499452-B A kind of poly N-vinylcaprolactam nanogel loaded with gold and manganese dioxide nanoparticles and its preparation and application 2021-06-11
US-2022403450-A1 Systems and methods for sequencing nucleotides using two optical channels 2021-06-03
cartIcon
Inquiry Basket