
TAMRA-Azide-PEG-Desthiobiotin
| Catalog Number | F07-0008 |
| Category | TAMRA Dyes |
| Molecular Formula | C57H81N11O14 |
| Molecular Weight | 1144.3 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
TAMRA-Azide-PEG-Desthiobiotin is a TAMRA red fluorescent dye linker containing desthiobiotin, which is a modified form of biotin that bonds to avidin, streptavidin and other biotin-binding protein-based affinity columns and are recognized by anti-biotin antibodies.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | 93% |
| IUPAC Name | 5-[[3-[2-[2-[2-(2-azidoethoxy)ethoxy]ethoxy]ethyl-[3-[2-[2-[2-[2-[6-[(4R,5S)-5-methyl-2-oxoimidazolidin-4-yl]hexanoylamino]ethoxy]ethoxy]ethoxy]ethylamino]-3-oxopropyl]amino]-3-oxopropyl]carbamoyl]-2-[3-(dimethylamino)-6-dimethylazaniumylidenexanthen-9-yl]benzoate |
| SMILES | CC1C(NC(=O)N1)CCCCCC(=O)NCCOCCOCCOCCNC(=O)CCN(CCOCCOCCOCCN=[N+]=[N-])C(=O)CCNC(=O)C2=CC(=C(C=C2)C3=C4C=CC(=[N+](C)C)C=C4OC5=C3C=CC(=C5)N(C)C)C(=O)[O-] |
| InChI | InChI=1S/C57H81N11O14/c1-40-48(64-57(75)63-40)9-7-6-8-10-51(69)59-20-25-76-29-33-80-34-30-77-26-21-60-52(70)18-23-68(24-28-79-32-36-81-35-31-78-27-22-62-65-58)53(71)17-19-61-55(72)41-11-14-44(47(37-41)56(73)74)54-45-15-12-42(66(2)3)38-49(45)82-50-39-43(67(4)5)13-16-46(50)54/h11-16,37-40,48H,6-10,17-36H2,1-5H3,(H5-,59,60,61,63,64,69,70,72,73,74,75)/t40-,48+/m0/s1 |
| InChIKey | ICJKGQCWBIVBNK-HBQYSILUSA-N |
| Solubility | Water, DMSO, DMF, DCM |
Product Specification
| Excitation | 546 |
| Emission | 565 |
| Storage | -20 °C |
Application
TAMRA-Azide-PEG-Desthiobiotin is a fluorescent azide bioconjugation reagent that combines a TAMRA fluorophore with an azide handle for copper-catalyzed click labeling and a desthiobiotin affinity motif for capture-based workflows. The PEG spacer helps maintain fluorophore accessibility and improves performance in labeling and pull-down formats. This reagent is commonly used to build fluorescent affinity probes, track biomolecule conjugates, and enable visualization of desthiobiotin-mediated capture in microscopy, imaging assays, and analytical workflows.
1. Fluorescent Affinity Pull-Down
TAMRA-Azide-PEG-Desthiobiotin supports fluorescence-guided capture and analysis of desthiobiotin-tagged complexes in pull-down experiments. Researchers use it to fluorescently trace binding and enrichment steps when immobilizing desthiobiotin interactions on streptavidin or streptavidin-like surfaces, then quantify recovered material by fluorescence readout. The azide functionality enables post-labeling strategies where the TAMRA signal is introduced onto azide-compatible biomolecule scaffolds while retaining the affinity handle for downstream capture, making it useful for workflow development in protein chemistry and chemical biology.
2. Click-Labeled Biomolecule Tracing
TAMRA-Azide-PEG-Desthiobiotin is used as a click-reactive fluorescent tag to label proteins, peptides, or other biomolecules bearing complementary alkyne groups for imaging and analytical tracking. In fluorescence microscopy and plate-based fluorescence assays, the TAMRA reporter provides a convenient way to monitor conjugate formation, labeling yield, and sample-to-sample consistency. The PEG spacer helps reduce steric effects that can otherwise suppress labeling efficiency or hinder fluorophore accessibility, supporting robust visualization of click-labeled conjugates in complex biological matrices.
3. Surface Immobilization Probes
TAMRA-Azide-PEG-Desthiobiotin is frequently incorporated into surface functionalization schemes where fluorescent reporting of immobilized biomolecules is required. Teams developing biosensor surfaces, assay substrates, or affinity capture materials use the desthiobiotin motif to anchor constructs to streptavidin-coated or streptavidin-like platforms while the TAMRA fluorophore provides direct readout of surface coverage and probe retention. The azide handle additionally supports modular assembly by click chemistry, enabling researchers to tune the surface-presented ligands while keeping a consistent fluorescence marker for process monitoring.
4. Fluorescent Probe Construction
TAMRA-Azide-PEG-Desthiobiotin is a practical building block for constructing fluorescent affinity probes used in molecular imaging reagent development and binding-assay optimization. By combining a fluorophore for detection with an affinity motif for capture, it enables probe formats that can be assembled onto targeting or recognition components via click chemistry. This approach is commonly used for developing research tools where fluorescent localization, enrichment, or binding workflow tracking is needed without requiring additional labeling steps after probe assembly.
Computed Properties
| XLogP3 | 1.9 |
| Hydrogen Bond Donor Count | 5 |
| Hydrogen Bond Acceptor Count | 17 |
| Rotatable Bond Count | 39 |
| Exact Mass | 1143.59644630 g/mol |
| Monoisotopic Mass | 1143.59644630 g/mol |
| Topological Polar Surface Area | 274Ų |
| Heavy Atom Count | 82 |
| Formal Charge | 0 |
| Complexity | 2190 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 2 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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