
Sulfo-Cyanine7 alkyne
| Catalog Number | R02-0034 |
| Category | Alkynes |
| Molecular Formula | C40H46N3KO7S2 |
| Molecular Weight | 784.04 |
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Product Introduction
Sulfo-Cyanine7 alkyne is a sulfonated terminal alkyne for copper-catalyzed Click chemistry reaction, which possesses significant aqueous solubility, and can be conjugated with azides in aqueous environment.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Related CAS | 2183440-55-1 (inner salt) |
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | potassium;3,3-dimethyl-1-[6-oxo-6-(prop-2-ynylamino)hexyl]-2-[2-[3-[2-(1,3,3-trimethyl-5-sulfonatoindol-1-ium-2-yl)ethenyl]cyclohex-2-en-1-ylidene]ethylidene]indole-5-sulfonate |
| SMILES | CC1(C2=C(C=CC(=C2)S(=O)(=O)[O-])[N+](=C1C=CC3=CC(=CC=C4C(C5=C(N4CCCCCC(=O)NCC#C)C=CC(=C5)S(=O)(=O)[O-])(C)C)CCC3)C)C.[K+] |
| InChI | InChI=1S/C40H47N3O7S2.K/c1-7-23-41-38(44)14-9-8-10-24-43-35-20-18-31(52(48,49)50)27-33(35)40(4,5)37(43)22-16-29-13-11-12-28(25-29)15-21-36-39(2,3)32-26-30(51(45,46)47)17-19-34(32)42(36)6;/h1,15-22,25-27H,8-14,23-24H2,2-6H3,(H2-,41,44,45,46,47,48,49,50);/q;+1/p-1 |
| InChIKey | BHUOSGHGWGCWQE-UHFFFAOYSA-M |
| Solubility | good in DMF, DMSO, significant in water |
| Appearance | dark green powder |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 240600 |
| Excitation | 750 |
| Emission | 773 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
Sulfo-Cyanine7 alkyne is a sulfonated, near-infrared cyanine dye bearing a terminal alkyne for copper-free click chemistry labeling. Its water-soluble design supports conjugation workflows used to generate NIR fluorescent bioconjugates for imaging and assay development, where low background and deep tissue-compatible spectral windows are often prioritized. The alkyne handle enables efficient attachment to azide-functional biomolecules, targeting ligands, and polymer or surface platforms to produce stable fluorescent constructs.
1. Biomolecule Click Labeling
Sulfo-Cyanine7 alkyne is used by chemical biology and imaging labs to fluorescently tag proteins, peptides, and other biomolecules through azide-alkyne click conjugation. Researchers incorporate the dye into antibody conjugates, affinity reagents, and carrier-linked imaging probes to track binding, distribution, and conjugate integrity in fluorescence-based workflows. The sulfonated cyanine scaffold helps maintain aqueous handling during conjugate preparation and downstream buffer-based experiments, supporting consistent labeling for microscopy and plate-reader readouts.
2. NIR Imaging Probe Construction
Sulfo-Cyanine7 alkyne serves as a near-infrared fluorophore building block for constructing imaging reagents where NIR emission is leveraged for reduced autofluorescence and improved signal visibility in complex samples. Teams developing fluorescent tracers and molecular imaging tools use the terminal alkyne to attach the dye to azide-functional targeting moieties, nanoparticles, or polymer backbones, producing conjugates suited for whole-sample fluorescence imaging and optical quantification. In these applications, the click-compatible dye handle provides a practical route to modular probe assembly without requiring dye redesign for each targeting scaffold.
3. Surface and Biomaterial Functionalization
Sulfo-Cyanine7 alkyne is applied in biomaterials research to fluorescently functionalize azide-bearing surfaces, hydrogels, and coatings for material tracking and interface studies. By click-coupling the dye to surface-immobilized azide groups, researchers create stable NIR-labeled materials used to visualize coating uniformity, monitor adsorption or retention, and follow material localization in microscopy or imaging systems. This approach is commonly used when a persistent fluorescent tag is needed to study biomaterial behavior under aqueous experimental conditions.
4. Flow Cytometry and Assay Tracing
Sulfo-Cyanine7 alkyne is used to generate NIR fluorescent conjugates for labeling-based assays and flow cytometry workflows where cyanine dyes are selected for compatibility with NIR-capable detection channels. Researchers prepare click-labeled probes by coupling the dye to azide-functional targeting ligands or assay reagents, enabling quantitative fluorescence readouts for binding studies, reagent tracking, and multiplex-compatible staining panels. The modular click handle supports rapid replacement of targeting components while keeping the fluorescent reporting element consistent across experiments.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 8 |
| Rotatable Bond Count | 11 |
| Exact Mass | 783.24142465 g/mol |
| Monoisotopic Mass | 783.24142465 g/mol |
| Topological Polar Surface Area | 167Ų |
| Heavy Atom Count | 53 |
| Formal Charge | 0 |
| Complexity | 1790 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 3 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
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