
Cyanine7 hydrazide
| Catalog Number | R05-0010 |
| Category | Hydrazides |
| Molecular Formula | C37H48Cl2N4O |
| Molecular Weight | 635.70 |
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Product Introduction
Hydrazide derivative of Cyanine7, a NIR fluorescent dye, an analog of Cy7®. This variety of heptamethine fluorophore contains a six-membered ring rigidizing the polymethine chain which allows to increase quantum yield by 20% compared to parent structure.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Related CAS | 2183440-61-9 (without anion) |
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | [6-[3,3-dimethyl-2-[2-[3-[2-(1,3,3-trimethylindol-1-ium-2-yl)ethenyl]cyclohex-2-en-1-ylidene]ethylidene]indol-1-yl]hexanoylamino]azanium;dichloride |
| SMILES | CC1(C2=CC=CC=C2[N+](=C1C=CC3=CC(=CC=C4C(C5=CC=CC=C5N4CCCCCC(=O)N[NH3+])(C)C)CCC3)C)C.[Cl-].[Cl-] |
| InChI | InChI=1S/C37H46N4O.2ClH/c1-36(2)29-16-8-10-18-31(29)40(5)33(36)23-21-27-14-13-15-28(26-27)22-24-34-37(3,4)30-17-9-11-19-32(30)41(34)25-12-6-7-20-35(42)39-38;;/h8-11,16-19,21-24,26H,6-7,12-15,20,25,38H2,1-5H3;2*1H |
| InChIKey | YBDAEKSMRYCHJV-UHFFFAOYSA-N |
| Solubility | moderate solubility in water, good in polar organic solvents (DMF, DMSO, alcohols) |
| Appearance | green powder |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 199000 |
| Fluorescence Quantum Yield | 0.3 |
| Excitation | 750 |
| Emission | 773 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
Cyanine7 hydrazide is a reactive cyanine dye designed for covalent attachment to carbonyl-containing biomolecules via hydrazone formation. As a far-red/near-infrared fluorophore, it is frequently used when deep tissue-compatible imaging channels or low-autofluorescence backgrounds are desirable, and its hydrazide functionality enables labeling of aldehyde-bearing targets generated during common bioconjugation workflows. Researchers use Cyanine7 hydrazide to prepare fluorescent conjugates for microscopy, imaging, and fluorescence-based binding or tracking assays.
1. Fluorescent Protein Labeling
Cyanine7 hydrazide is widely used to fluorescently label proteins that present aldehyde groups, including oxidized glycans and aldehyde-functionalized protein conjugates. In chemical biology and biomolecular engineering workflows, it supports preparation of labeled antibodies, lectins, and protein probes for fluorescence imaging and binding studies, where far-red emission helps reduce interference from common biological autofluorescence. The hydrazide reactivity is particularly useful when glycoprotein or carbohydrate components are selectively oxidized to introduce aldehydes for subsequent dye attachment.
2. Glycan And Oligosaccharide Tagging
Cyanine7 hydrazide is commonly employed in glycomics-oriented labeling strategies to tag oxidized oligosaccharides and glycan-containing biomaterials. Researchers use it to generate fluorescent glycan conjugates for characterizing glycan binding interactions, tracking glycan presentation on biomolecules, and visualizing carbohydrate-mediated processes in vitro. This application is especially relevant when aldehyde generation is performed upstream to introduce reactive carbonyl handles for dye installation, enabling consistent fluorescent readouts in imaging and plate-based fluorescence assays.
3. Fluorescent Conjugate Imaging
Cyanine7 hydrazide-labeled conjugates are routinely used as molecular imaging reagents for fluorescence microscopy and fluorescence imaging systems that operate in the far-red spectral region. In cell and material studies, labeled biomolecules prepared with Cyanine7 hydrazide enable visualization of binding, uptake, and localization patterns of tagged targets, while the cyanine dye's emission profile supports imaging workflows designed to minimize background from visible-range fluorophores. The resulting conjugates are also used to monitor labeled components in multi-step assay formats where robust far-red detection channels are available.
4. Biomaterial Surface Functionalization
Cyanine7 hydrazide is applied to fluorescently functionalize biomaterial surfaces and polymer scaffolds that have been equipped with aldehyde groups, enabling spatial mapping of immobilized biomolecules. Materials scientists and biointerface researchers use dye-modified surfaces to verify coating uniformity, follow immobilized ligand presentation, and support fluorescence-based characterization of surface-functionalized platforms. When building fluorescently trackable materials for assay development, Cyanine7 hydrazide provides a practical route to incorporate far-red labeling into otherwise non-fluorescent substrates.
Computed Properties
| Hydrogen Bond Donor Count | 2 |
| Hydrogen Bond Acceptor Count | 4 |
| Rotatable Bond Count | 9 |
| Exact Mass | 634.3205176 g/mol |
| Monoisotopic Mass | 634.3205176 g/mol |
| Topological Polar Surface Area | 63Ų |
| Heavy Atom Count | 44 |
| Formal Charge | 0 |
| Complexity | 1150 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 3 |
| Covalently-Bonded Unit Count | 3 |
| Compound Is Canonicalized | Yes |
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