
BDP 630/650 hydrazide
| Catalog Number | R05-0003 |
| Category | BODIPY |
| Molecular Formula | C23H20N4BClF2O2S |
| Molecular Weight | 500.76 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP 630/650 is a red emitting dye which is based on the borodipyrromethene scaffold. This is a carbonyl reactive dye that is useful for the labeling of aldehydes and ketones, including sugars.BDP 630/650 fluorophore is particularly useful for fluorescence polarization assays.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Related CAS | 2183473-43-8 (hydrochloride) 2183473-42-7 (inner salt) |
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | [[2-[4-[(E)-2-(2,2-difluoro-12-thiophen-2-yl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)ethenyl]phenoxy]acetyl]amino]azanium;chloride |
| SMILES | [B-]1(N2C(=CC=C2C=CC3=CC=C(C=C3)OCC(=O)N[NH3+])C=C4[N+]1=C(C=C4)C5=CC=CS5)(F)F.[Cl-] |
| InChI | InChI=1S/C23H19BF2N4O2S.ClH/c25-24(26)29-17(6-3-16-4-10-20(11-5-16)32-15-23(31)28-27)7-8-18(29)14-19-9-12-21(30(19)24)22-2-1-13-33-22;/h1-14H,15,27H2,(H,28,31);1H/b6-3+; |
| InChIKey | FQAOSWUYWCXSRX-ZIKNSQGESA-N |
| Solubility | good in DMF, DMSO |
| Appearance | dark colored solid |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 97000 |
| Fluorescence Quantum Yield | 0.91 |
| Excitation | 628 |
| Emission | 642 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP 630/650 hydrazide is a BODIPY-based fluorescent hydrazide designed for covalent labeling of carbonyl-containing biomolecules and for constructing fluorescent conjugates where a bright red/orange emission is advantageous. The hydrazide functionality enables efficient coupling to aldehydes generated on proteins, peptides, glycans, or other oxidized targets, supporting fluorescence imaging and quantitative fluorescence readouts in chemical biology and materials research. Its dye scaffold is commonly used as a stable, photostable reporter for labeling workflows that require robust far-red to red detection.
1. Protein Aldehyde Labeling
BDP 630/650 hydrazide is used by protein and antibody labeling groups to generate fluorescent conjugates for downstream fluorescence imaging and assay development. Researchers typically introduce aldehyde groups onto proteins, peptides, or glycoproteins (for example, via controlled oxidation of carbohydrate moieties or aldehyde incorporation strategies) and then couple BDP 630/650 hydrazide to form stable hydrazone-linked fluorescent products. The resulting labeled biomolecules are used for tracking biomolecule uptake, monitoring binding interactions in vitro, and preparing fluorescent standards for imaging experiments where red spectral channels are preferred.
2. Glycan and Carbohydrate Conjugation
BDP 630/650 hydrazide is frequently selected for labeling glycoproteins and carbohydrate-decorated biomaterials because hydrazide coupling provides a practical route to attach a red-emitting BODIPY reporter to oxidized sugar residues. Chemical biology workflows use this reagent to prepare fluorescent glycan conjugates for studying lectin interactions, cell-surface recognition, and carbohydrate-mediated binding in microscopy and plate-based fluorescence assays. In biomaterials research, the dye-labeled glycoconjugates are also used to functionalize surfaces or to incorporate fluorescent tags into polymer or hydrogel systems for spatial visualization of biomolecule distribution.
3. Fluorescent Probe Construction
BDP 630/650 hydrazide supports fluorescent probe development where aldehyde-reactive labeling is used to install a reporter onto a targeting scaffold or recognition element. Probe developers use the hydrazide to create conjugates that can be incorporated into larger sensing platforms, including affinity reagents and multicomponent imaging constructs, enabling readout in red detection channels. This reagent is also used in research settings to generate labeled components for FRET pair screening or for building ratiometric or multiplex-compatible labeling schemes, leveraging the dye's emission in the 630/650 region.
4. Biomaterial Surface Functionalization
BDP 630/650 hydrazide is applied in biomaterials and surface engineering to create fluorescently labeled materials for microscopy-based characterization of functional coatings and immobilized biomolecules. Materials scientists use aldehyde-functionalized surfaces or oxidized polymer layers as coupling handles, then attach the BDP 630/650 hydrazide to generate stable fluorescent labeling for tracking coating uniformity, measuring surface coverage trends, and visualizing biomolecule immobilization patterns. The resulting fluorescent materials are commonly used in experimental workflows that combine fluorescence microscopy with quantitative imaging to compare functionalization conditions across batches.
Computed Properties
| Hydrogen Bond Donor Count | 2 |
| Hydrogen Bond Acceptor Count | 7 |
| Rotatable Bond Count | 6 |
| Exact Mass | 500.1056613 g/mol |
| Monoisotopic Mass | 500.1056613 g/mol |
| Topological Polar Surface Area | 102Ų |
| Heavy Atom Count | 34 |
| Formal Charge | 0 |
| Complexity | 901 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 1 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
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