
BDP TR hydrazide
| Catalog Number | R05-0006 |
| Category | BODIPY |
| Molecular Formula | C21H18N4BClF2O2S |
| Molecular Weight | 474.72 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP TR is a borondipyrromethene (BODIPY®) dye for ROX/Texas Red channel. This compound is a hydrazide reactive derivative, that can be used for the labeling of aldehydes and ketones with BDP TR.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Related CAS | 2183473-49-4 (hydrochloride) 2183473-48-3 (inner salt) |
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | [[2-[4-(2,2-difluoro-12-thiophen-2-yl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)phenoxy]acetyl]amino]azanium;chloride |
| SMILES | [B-]1(N2C(=CC=C2C3=CC=CS3)C=C4[N+]1=C(C=C4)C5=CC=C(C=C5)OCC(=O)N[NH3+])(F)F.[Cl-] |
| InChI | InChI=1S/C21H17BF2N4O2S.ClH/c23-22(24)27-15(12-16-6-10-19(28(16)22)20-2-1-11-31-20)5-9-18(27)14-3-7-17(8-4-14)30-13-21(29)26-25;/h1-12H,13,25H2,(H,26,29);1H |
| InChIKey | CHLVWWMHVHYZAI-UHFFFAOYSA-N |
| Solubility | good in DMF, DMSO, moderate in water |
| Appearance | violet powder |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 69000 |
| Fluorescence Quantum Yield | 0.9 |
| Excitation | 589 |
| Emission | 616 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP TR hydrazide is a BODIPY-based fluorescent hydrazide reagent designed for covalent fluorescent labeling of carbonyl-containing biomolecules and hydrazone-forming conjugation workflows. Its bright, photostable dye core supports fluorescence microscopy and quantitative fluorescence assays, while the hydrazide functionality enables downstream attachment to aldehyde-bearing targets such as oxidized carbohydrates, glycoproteins, and engineered biomolecules. Researchers use this dye to generate fluorescent conjugates for imaging and assay development where robust fluorophore performance is required.
1. Biomolecule Fluorescent Labeling
BDP TR hydrazide is used to prepare fluorescently labeled proteins, peptides, and carbohydrate-bearing biomolecules through conjugation to aldehyde groups introduced by standard oxidation or periodate-type derivatization workflows. In practice, bioconjugation teams incorporate the dye into labeling schemes for tracking biomolecule localization, monitoring binding or uptake in cell-based experiments, and generating fluorescent standards for assay calibration. The hydrazide handle is particularly useful when aldehyde-functional intermediates are available, enabling stable dye incorporation into conjugates used in fluorescence imaging and quantitative readouts.
2. Glycan And Carbohydrate Tagging
BDP TR hydrazide is frequently selected for glycan labeling strategies in chemical biology and glycobiology research, where oxidized carbohydrate motifs provide aldehyde handles for hydrazone-forming conjugation. This labeling approach is commonly used to visualize glycoproteins, study carbohydrate-mediated interactions, and build fluorescent probes for membrane-associated or extracellular biomolecule tracking. By coupling the BDP TR fluorophore to carbohydrate-derived aldehyde sites, researchers obtain conjugates that support microscopy workflows and fluorescence-based characterization of glycan-dependent processes.
3. Fluorescent Probe Construction
BDP TR hydrazide serves as a practical fluorophore building block for constructing fluorescent probes and reagent conjugates that require a strong dye signal in aqueous assay environments. Probe developers use the hydrazide functionality to attach the BDP TR dye to aldehyde-bearing linkers or biomolecular scaffolds, producing labeled constructs for imaging-based studies and fluorescence assays. This reagent is also used to generate dye-labeled components for multistep probe assembly where a reactive hydrazide dye is needed to incorporate the fluorophore into the final detection reagent.
4. Surface And Material Functionalization
BDP TR hydrazide is applied in biomaterials and surface chemistry workflows to fluorescently tag materials and coatings that present aldehyde groups after surface oxidation or functional group introduction. Materials scientists use the dye to create fluorescently labeled surfaces for studying adsorption, immobilization behavior, and material-biomolecule interactions under microscopy and fluorescence readouts. Fluorescent surface labeling with BDP TR hydrazide supports visualization of immobilized layers and can be integrated into characterization pipelines for engineered biomaterials and functional coatings.
Computed Properties
| Hydrogen Bond Donor Count | 2 |
| Hydrogen Bond Acceptor Count | 7 |
| Rotatable Bond Count | 5 |
| Exact Mass | 474.0900112 g/mol |
| Monoisotopic Mass | 474.0900112 g/mol |
| Topological Polar Surface Area | 102Ų |
| Heavy Atom Count | 32 |
| Formal Charge | 0 |
| Complexity | 828 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
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