
BDP R6G hydrazide
| Catalog Number | R05-0005 |
| Category | BODIPY |
| Molecular Formula | C18H18N4BClF2O |
| Molecular Weight | 390.62 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP R6G is a borondipyrromethene dye whose absorption and emission spectra resemble those of R6G (rhodamine 6G). This hydrazide is a carbonyl-reactive compound that is useful for the labeling of aldehydes, ketones, and most carbohydrates (oxidized with periodate).
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | [3-(2,2-difluoro-12-phenyl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)propanoylamino]azanium;chloride |
| SMILES | [B-]1(N2C(=CC=C2CCC(=O)N[NH3+])C=C3[N+]1=C(C=C3)C4=CC=CC=C4)(F)F.[Cl-] |
| InChI | InChI=1S/C18H17BF2N4O.ClH/c20-19(21)24-14(9-11-18(26)23-22)6-7-15(24)12-16-8-10-17(25(16)19)13-4-2-1-3-5-13;/h1-8,10,12H,9,11,22H2,(H,23,26);1H |
| InChIKey | QEUBCPGVPKSGMU-UHFFFAOYSA-N |
| Solubility | good in DMF, DMSO |
| Appearance | brown powder |
Product Specification
| Fluorescence Quantum Yield | 0.96 |
| Excitation | 530 |
| Emission | 548 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP R6G hydrazide is a reactive fluorescent labeling reagent built on a rhodamine-family dye scaffold, supplied in a hydrazide form for covalent attachment to carbonyl-containing biomolecules. In fluorescence workflows, it is used to generate intensely colored conjugates for imaging and quantitative assays, where the dye's bright emission supports sensitive visualization of labeled targets. The hydrazide functionality enables practical conjugation strategies that are widely adopted in fluorescence microscopy and bioassay development.
1. Fluorescent Protein Labeling
BDP R6G hydrazide is frequently used by protein chemistry and chemical biology groups to prepare fluorescently labeled proteins for microscopy and fluorescence-based readouts. Researchers commonly incorporate the dye into labeling workflows where protein carbonyl groups are available or introduced as part of a labeling strategy, producing conjugates that can be tracked in solution, immobilized on surfaces, or used as fluorescent standards. This reagent is also used for generating labeled affinity reagents and imaging probes that require covalent dye attachment rather than passive adsorption.
2. Fluorescence Microscopy Tracing
BDP R6G hydrazide supports cellular and biomaterials imaging workflows where covalent fluorescent tagging is needed for robust localization and tracking. In fluorescence microscopy, labeled proteins, peptides, or other carbonyl-bearing biomolecules prepared with this hydrazide are used to visualize transport, binding to biomaterial matrices, and spatial distribution in experimental systems such as coated surfaces, hydrogels, and patterned scaffolds. Its rhodamine-family brightness makes it a common choice for designing microscopy reagents that provide clear contrast under standard fluorescence imaging setups.
3. Fluorescence-Based Bioassays
BDP R6G hydrazide is used in fluorescence assay development to create labeled biomolecular reagents that report binding, enrichment, or reaction progress through dye fluorescence. Assay developers prepare fluorescent conjugates for plate-based measurements, microplate readers, and gel-based fluorescence workflows, enabling quantitative tracking of labeled components in experimental protocols. The hydrazide-based covalent labeling approach helps maintain signal stability during wash steps and incubation periods typical for fluorescence assays.
4. Biomaterial Surface Functionalization
BDP R6G hydrazide is applied in materials science and biomaterials research to introduce fluorescent tags onto functionalized surfaces and matrices for imaging-guided characterization. Researchers use dye-labeled biomolecules derived from this hydrazide to decorate coatings, hydrogel components, and other carbonyl-containing substrates, enabling visualization of coating uniformity, adsorption behavior, and spatial organization. This workflow is particularly useful for developing fluorescently traceable biomaterials used in microscopy and surface analysis experiments.
Computed Properties
| Hydrogen Bond Donor Count | 2 |
| Hydrogen Bond Acceptor Count | 5 |
| Rotatable Bond Count | 4 |
| Exact Mass | 390.1230254 g/mol |
| Monoisotopic Mass | 390.1230254 g/mol |
| Topological Polar Surface Area | 64.7Ų |
| Heavy Atom Count | 27 |
| Formal Charge | 0 |
| Complexity | 685 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
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