
Cyanine7.5 alkyne
| Catalog Number | R02-0025 |
| Category | Alkynes |
| Molecular Formula | C48H52ClN3O |
| Molecular Weight | 722.40 |
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Product Introduction
Alkyne derivative of Cyanine7.5, a near infrared fluorophore. This alkyne is suitable for copper-catalyzed Click Chemistry. This fluorophore is useful for in vivo imaging, its spectral properties are similar to ICG (indocyanine green) with somewhat higher fluorescence quantum yield.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | 6-[1,1-dimethyl-2-[2-[3-[2-(1,1,3-trimethylbenzo[e]indol-3-ium-2-yl)ethenyl]cyclohex-2-en-1-ylidene]ethylidene]benzo[e]indol-3-yl]-N-prop-2-ynylhexanamide;chloride |
| SMILES | CC1(C(=[N+](C2=C1C3=CC=CC=C3C=C2)C)C=CC4=CC(=CC=C5C(C6=C(N5CCCCCC(=O)NCC#C)C=CC7=CC=CC=C76)(C)C)CCC4)C.[Cl-] |
| InChI | InChI=1S/C48H51N3O.ClH/c1-7-31-49-44(52)22-9-8-14-32-51-41-28-26-37-19-11-13-21-39(37)46(41)48(4,5)43(51)30-24-35-17-15-16-34(33-35)23-29-42-47(2,3)45-38-20-12-10-18-36(38)25-27-40(45)50(42)6;/h1,10-13,18-21,23-30,33H,8-9,14-17,22,31-32H2,2-6H3;1H |
| InChIKey | BEKYZMBPLUHVRG-UHFFFAOYSA-N |
| Solubility | soluble in organic solvents (DMSO, DMF, dichloromethane), low solubility in water |
| Appearance | dark green powder |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 223000 |
| Excitation | 788 |
| Emission | 808 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. |
Application
Cyanine7.5 alkyne is a Cy7.5-class near-infrared fluorescent dye bearing an alkyne handle, enabling bioorthogonal labeling via click chemistry to install the fluorophore onto biomolecules, polymers, and biomaterial surfaces. Its strong NIR emission supports fluorescence imaging workflows where reduced background and deeper tissue penetration are advantageous, while the alkyne functionality allows downstream conjugate construction for research-grade molecular imaging and assay development.
1. Biomolecule Labeling
Cyanine7.5 alkyne is used by chemical biology and glycobiology groups to generate fluorescently labeled proteins, peptides, and other biomolecules through click-based conjugation strategies that introduce the Cy7.5 fluorophore at defined positions. Researchers commonly incorporate the dye into labeling pipelines for binding studies, fluorescent tracking of biomolecular interactions, and preparation of imaging reagents for microscopy-based localization experiments. The NIR emission profile is particularly useful when background fluorescence from biological autofluorescence needs to be minimized during imaging and quantification.
2. Fluorescence Imaging Probes
Cyanine7.5 alkyne serves as a modular fluorophore building block for constructing NIR fluorescence imaging probes used in cellular imaging and molecular imaging reagent development. Teams developing probe libraries for platform screening often attach the dye to targeting ligands, affinity reagents, or carrier scaffolds to create conjugates that can be imaged on standard optical fluorescence systems configured for Cy7.5-like excitation/emission windows. This reagent format is also used to prepare reference standards and calibration conjugates for quantitative imaging workflows where consistent dye performance across batches is important.
3. Surface And Material Functionalization
Cyanine7.5 alkyne is applied in biomaterials science to fluorescently tag hydrogels, polymer films, nanoparticles, and other engineered surfaces for visualization of material distribution, coating integrity, and surface-associated processes. Material scientists use the alkyne functionality to incorporate the dye into functionalized constructs that can be imaged by fluorescence microscopy or optical imaging setups compatible with near-infrared detection. Such labeling is frequently used to monitor biomaterial assembly, surface remodeling, and transport phenomena in research settings without relying on dye adsorption alone.
4. Click-Constructed FRET Pairs
Cyanine7.5 alkyne is frequently incorporated into FRET-oriented labeling designs where Cy7.5 acts as an acceptor in donor-acceptor architectures built by click-compatible conjugation. Fluorescence assay developers use these constructs to create distance-dependent reporter systems for monitoring molecular proximity in labeled biomolecular assemblies, binding assays, and platform prototyping. By enabling controlled installation of the Cy7.5 acceptor onto defined components, the alkyne handle supports rational FRET pair construction for fluorescence readouts in screening and mechanistic studies.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 3 |
| Rotatable Bond Count | 10 |
| Exact Mass | 721.3798910 g/mol |
| Monoisotopic Mass | 721.3798910 g/mol |
| Topological Polar Surface Area | 35.4Ų |
| Heavy Atom Count | 53 |
| Formal Charge | 0 |
| Complexity | 1530 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 3 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
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