
Sulfo-Cyanine7 azide
| Catalog Number | F03-0014 |
| Category | sulfo-Cyanine7 |
| Molecular Formula | C40H49N6KO7S2 |
| Molecular Weight | 829.08 |
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Product Introduction
Sulfo-Cyanine7 azide is a near-infrared fluorophore belonging to the cyanine dye family, known for its extended conjugated π-electron system that facilitates absorption and emission in the near-infrared spectrum. This compound features an azide functional group, enabling bioorthogonal conjugation through click chemistry with alkyne-modified biomolecules, making it suitable for labeling in complex biological environments. Its spectral properties and water-soluble sulfonate groups support its use in fluorescence imaging and labeling applications, including protein conjugation and live-cell imaging workflows.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | potassium;1-[6-(3-azidopropylamino)-6-oxohexyl]-3,3-dimethyl-2-[2-[3-[2-(1,3,3-trimethyl-5-sulfonatoindol-1-ium-2-yl)ethenyl]cyclohex-2-en-1-ylidene]ethylidene]indole-5-sulfonate |
| SMILES | CC1(C2=C(C=CC(=C2)S(=O)(=O)[O-])[N+](=C1C=CC3=CC(=CC=C4C(C5=C(N4CCCCCC(=O)NCCCN=[N+]=[N-])C=CC(=C5)S(=O)(=O)[O-])(C)C)CCC3)C)C.[K+] |
| InChI | InChI=1S/C40H50N6O7S2.K/c1-39(2)32-26-30(54(48,49)50)16-18-34(32)45(5)36(39)20-14-28-11-9-12-29(25-28)15-21-37-40(3,4)33-27-31(55(51,52)53)17-19-35(33)46(37)24-8-6-7-13-38(47)42-22-10-23-43-44-41;/h14-21,25-27H,6-13,22-24H2,1-5H3,(H2-,42,47,48,49,50,51,52,53);/q;+1/p-1 |
| InChIKey | UFPWBSQENSNYIX-UHFFFAOYSA-M |
| Solubility | good in water, DMF, DMSO |
| Appearance | dark green powder |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 240600 |
| Excitation | 750 |
| Emission | 773 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
Sulfo-Cyanine7 azide is a sulfonated, azide-functionalized cyanine dye designed for fluorescence labeling workflows that rely on azide chemistry. Its water-soluble, near-infrared-emitting cyanine scaffold enables sensitive imaging and tracking in biological and materials research, while the azide handle supports bioorthogonal conjugation to alkynes for constructing fluorescent bioconjugates, probes, and labeled surfaces.
1. Biomolecule Labeling
Sulfo-Cyanine7 azide is used by chemical biology and glycobiology groups to fluorescently label proteins, peptides, and other biomolecules via azide-alkyne click conjugation. Researchers commonly incorporate the dye into labeling pipelines to generate near-infrared conjugates for fluorescence imaging readouts, including tracking of labeled biomolecules in complex mixtures such as cell lysates, conditioned media, or purified protein samples. The sulfonated cyanine structure helps maintain aqueous compatibility during conjugate preparation and downstream handling, supporting workflows where reliable dye solubilization is important.
2. Fluorescent Probe Construction
Sulfo-Cyanine7 azide serves as a key fluorescent building block for probe development in microscopy and molecular imaging applications. Teams developing targeting probes or assay reagents use the azide functionality to attach the cyanine fluorophore to probe scaffolds that contain complementary alkyne groups, enabling modular construction of fluorescent conjugates for localization studies and imaging-based characterization of biomolecular interactions. Because the dye is engineered for near-infrared fluorescence, it is frequently selected when researchers want reduced background relative to visible fluorophores and a strong signal for imaging in biological contexts.
3. Surface And Material Functionalization
Sulfo-Cyanine7 azide is also applied in biomaterials science to create fluorescently labeled surfaces and engineered materials through click-based immobilization strategies. Researchers functionalize hydrophilic polymer coatings, hydrogel components, or other alkyne-bearing substrates with the dye to generate stable fluorescent markers for material characterization, surface mapping, and imaging of biomaterial interfaces. This use case is particularly common in studies where spatial visualization of labeled materials is needed without relying on dye adsorption, and where the sulfonated dye helps maintain compatibility with aqueous processing conditions.
4. In Vivo Imaging Research Probes
Sulfo-Cyanine7 azide is frequently incorporated into near-infrared imaging reagent development for preclinical research workflows that require fluorescent tracers with an azide handle for modular attachment. Investigators use the dye to build conjugates that can be administered as fluorescent imaging reagents in animal imaging studies, supporting biodistribution and clearance experiments in research settings. The sulfonated cyanine scaffold and azide click functionality make it a practical choice for creating consistent fluorescent tracer conjugates from alkyne-containing targeting or carrier components.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 10 |
| Rotatable Bond Count | 14 |
| Exact Mass | 828.27412176 g/mol |
| Monoisotopic Mass | 828.27412176 g/mol |
| Topological Polar Surface Area | 181Ų |
| Heavy Atom Count | 56 |
| Formal Charge | 0 |
| Complexity | 1860 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 3 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
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