
R6G NHS ester, 5-isomer
| Catalog Number | F05-0025 |
| Category | Rhodamine |
| Molecular Formula | C31H29N3O7 |
| Molecular Weight | 555.58 |
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Product Introduction
Rhodamine 6G (R6G) is a xanthene dye of rhodamine series that has been used for the labeling of oligonucleotides and DNA for quite a long time.
Chemical Information
Product Specification
Application
Chemical Information
| Synonyms | BP-28887; NGN00556; NGN 00556; NGN-00556 |
| IUPAC Name | 5-(2,5-dioxopyrrolidin-1-yl)oxycarbonyl-2-[3-(ethylamino)-6-ethylimino-2,7-dimethylxanthen-9-yl]benzoic acid |
| SMILES | CCNC1=CC2=C(C=C1C)C(=C3C=C(C(=NCC)C=C3O2)C)C4=C(C=C(C=C4)C(=O)ON5C(=O)CCC5=O)C(=O)O |
| InChI | InChI=1S/C31H29N3O7/c1-5-32-23-14-25-21(11-16(23)3)29(22-12-17(4)24(33-6-2)15-26(22)40-25)19-8-7-18(13-20(19)30(37)38)31(39)41-34-27(35)9-10-28(34)36/h7-8,11-15,32H,5-6,9-10H2,1-4H3,(H,37,38) |
| InChIKey | NVDJORHKBRFQLZ-UHFFFAOYSA-N |
| Solubility | Soluble in DMF, DMSO |
Product Specification
| Excitation | 519 |
| Emission | 546 |
Application
R6G NHS ester, 5-isomer is a reactive xanthene dye derivative designed for NHS-ester bioconjugation, enabling covalent attachment to primary amine groups on proteins, peptides, and other amine-containing biomolecules. Its bright fluorescence in the visible range makes it a common labeling reagent for fluorescence microscopy and fluorescence-based assays where robust signal generation is required. Researchers typically use the dye to prepare fluorescent conjugates for imaging, tracking, and quantitative readouts, with labeling performance driven by the NHS ester's reactivity toward lysine residues and N-termini.
1. Protein And Antibody Labeling
R6G NHS ester, 5-isomer is frequently used by protein chemistry and immunoassay developers to generate fluorescently labeled antibodies, antibody fragments, and affinity reagents for downstream fluorescence imaging and assay workflows. Covalent coupling to lysine side chains and N-terminal amines supports stable conjugate preparation for microscopy studies, binding assays, and conjugate-based detection formats. In practice, the dye's strong emission is leveraged to visualize target binding and localization when conjugate brightness is a key experimental parameter.
2. Fluorescence Microscopy Labeling
R6G NHS ester, 5-isomer is used in fluorescence microscopy workflows to label biomolecules and biomaterial components that contain accessible primary amines, supporting cellular imaging experiments, labeling of extracellular targets, and fluorescent tagging of experimental probes. Imaging teams commonly prepare dye-conjugated proteins for staining protocols that require covalent attachment rather than passive adsorption, improving labeling consistency across samples. The resulting fluorescent conjugates are also used to track biomolecular distribution in fixed or prepared microscopy samples, where covalent dye attachment helps maintain signal during washing and imaging steps.
3. Flow Cytometry Fluorescent Conjugates
R6G NHS ester, 5-isomer is applied by cell biology laboratories to prepare fluorescent conjugates for flow cytometry-based readouts, particularly when amine-reactive labeling is needed for consistent reporter attachment to proteins used as staining reagents. Researchers use dye-labeled proteins and targeting reagents to quantify binding to cell-associated targets and to monitor labeling intensity across populations. The dye's bright fluorescence supports clear signal generation in flow-based detection workflows where fluorescent labeling chemistry must be reliable and reproducible across experimental batches.
4. Fluorescent Bioassay Reagent Preparation
R6G NHS ester, 5-isomer is widely used in fluorescence assay development to prepare labeled assay components, including fluorescent protein conjugates used as reporters in binding and interaction assays. Assay developers use the NHS-ester functionality to attach the dye to amine-containing proteins, enabling construction of fluorescence-based reagents for plate reader measurements and imaging-compatible formats. This approach is commonly used in research settings where fluorescent labeling of assay reagents is required to translate molecular recognition events into measurable fluorescence signals.
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