
Diketone-PEG12-DBCO
| Catalog Number | R01-0332 |
| Category | Cycloalkyne Dyes (DBCO) |
| Molecular Formula | C₅₈H₈₁N₃O₁₇ |
| Molecular Weight | 1092.27 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
Diketone-PEG12-DBCO is a polyethylene glycol (PEG)-based PROTAC linker. Diketone-PEG12-DBCO can be used in the synthesis of a series of PROTACs.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | 98% |
| IUPAC Name | 4-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-N-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[2-[3-[4-(3,5-dioxohexyl)anilino]-3-oxopropoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethyl]-4-oxobutanamide |
| SMILES | CC(=O)CC(=O)CCC1=CC=C(C=C1)NC(=O)CCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCNC(=O)CCC(=O)N2CC3=CC=CC=C3C#CC4=CC=CC=C42 |
| InChI | InChI=1S/C58H81N3O17/c1-48(62)46-54(63)17-12-49-10-15-53(16-11-49)60-57(65)20-22-67-24-26-69-28-30-71-32-34-73-36-38-75-40-42-77-44-45-78-43-41-76-39-37-74-35-33-72-31-29-70-27-25-68-23-21-59-56(64)18-19-58(66)61-47-52-8-3-2-6-50(52)13-14-51-7-4-5-9-55(51)61/h2-11,15-16H,12,17-47H2,1H3,(H,59,64)(H,60,65) |
| InChIKey | HVYUYTQDCDUNKR-UHFFFAOYSA-N |
Product Specification
| Storage | Please store the product under the recommended conditions in the Certificate of Analysis. |
Application
Diketone-PEG12-DBCO is a PEGylated strained-alkyne click chemistry reagent that combines a diketone handle for rapid oxime/β-diketone-type conjugation workflows with a DBCO (dibenzocyclooctyne) cyclooctyne for highly selective strain-promoted azide–alkyne cycloaddition (SPAAC). The extended PEG12 spacer improves aqueous solubility and reduces steric congestion, making it well-suited for labeling, surface functionalization, and probe construction in chemical biology and biomaterials research. Its dual-function design is commonly used to install a clickable DBCO moiety onto biomolecule- or polymer-derived scaffolds, enabling downstream attachment of azide-bearing partners for imaging, diagnostics development, and multicomponent assembly.
1. Biomolecule Labeling Workflows
Diketone-PEG12-DBCO is widely used to generate DBCO-functional biomolecule conjugates for subsequent SPAAC coupling to azide-tagged reporters, affinity handles, or nucleic-acid and peptide components. The PEG12 spacer helps maintain accessibility of the cyclooctyne toward azide partners in complex biological buffers, supporting robust labeling of proteins, antibodies, and enzyme scaffolds used in research assays and molecular profiling. Researchers also favor this reagent when a preinstalled clickable handle is needed for modular workflows, such as building multi-labeled constructs where different azide-bearing components are added at different stages. The diketone functionality provides a convenient entry point for attaching the DBCO-bearing moiety to carbonyl-containing biomolecular surfaces or scaffold chemistries, enabling a practical route to stable, water-compatible conjugates.
2. Surface And Material Functionalization
Diketone-PEG12-DBCO is commonly applied in biomaterials science to functionalize polymeric surfaces, hydrogels, and coating layers with DBCO groups that can later be decorated via azide–DBCO click reactions. The PEG12 chain improves compatibility with aqueous processing and can reduce nonspecific interactions at material interfaces, which is valuable for creating reproducible immobilization chemistries for biosensing and materials characterization. In surface engineering workflows, the reagent is used to install a stable clickable motif onto substrates so that azide-bearing ligands, dyes, or capture reagents can be patterned or sequentially assembled. This approach supports scalable lab-to-industry development of functional materials where orthogonal, mild coupling conditions are preferred for preserving substrate integrity and maintaining consistent surface presentation.
3. Multicolor Imaging Probe Assembly
Diketone-PEG12-DBCO is a practical building block for constructing imaging probes and molecular tools that require modular attachment of fluorophores, affinity tags, or imaging-reactive groups through SPAAC chemistry. The PEG12 linker helps maintain probe solubility and reduces steric hindrance, supporting efficient coupling to azide-functional imaging reagents used in fluorescence-based assays and microscopy workflows. By installing DBCO onto a chosen scaffold first, researchers can flexibly exchange azide-bearing components to tune labeling density, spectral properties, or targeting motifs without redesigning the entire conjugate. The diketone-bearing portion supports scaffold installation strategies that are compatible with common labeling pipelines, enabling consistent production of clickable probe intermediates for downstream conjugation.
4. Diagnostic Reagent And Assay Development
Diketone-PEG12-DBCO is used in diagnostic reagent development and assay chemistry to produce clickable intermediate conjugates for assembling detection reagents, affinity capture formats, and assay-compatible labeling components. The DBCO handle enables straightforward SPAAC coupling to azide-functional reporter systems, including enzyme labels, polymer tags, and multivalent detection constructs, supporting streamlined reagent manufacturing workflows. PEG12 spacing is particularly useful when building reagents that must remain stable and accessible in assay buffers, where steric effects can limit coupling efficiency. In many laboratory and industrial R&D settings, this reagent serves as a convenient platform to standardize the installation of a clickable moiety onto assay-relevant scaffolds, allowing rapid iteration of reagent formats by swapping azide-bearing components during development.
Computed Properties
| XLogP3 | 0.9 |
| Hydrogen Bond Donor Count | 2 |
| Hydrogen Bond Acceptor Count | 17 |
| Rotatable Bond Count | 48 |
| Exact Mass | 1091.55659812 g/mol |
| Monoisotopic Mass | 1091.55659812 g/mol |
| Topological Polar Surface Area | 223Ų |
| Heavy Atom Count | 78 |
| Formal Charge | 0 |
| Complexity | 1670 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
Recommended Services
Recommended Articles
- Hoechst Dyes: Definition, Structure, Mechanism and Applications
- Mastering the Spectrum: A Comprehensive Guide to Cy3 and Cy5 Dyes
- Fluorescent Probes: Definition, Structure, Types and Application
- Fluorescent Dyes: Definition, Mechanism, Types and Application
- Coumarin Dyes: Definition, Structure, Benefits, Synthesis and Uses
- Unlocking the Power of Fluorescence Imaging: A Comprehensive Guide
- Cell Imaging: Definitions, Systems, Protocols, Dyes, and Applications
- Lipid Staining: Definition, Principles, Methods, Dyes, and Uses
- Flow Cytometry: Definition, Principles, Protocols, Dyes, and Uses
- Nucleic Acid Staining: Definition, Principles, Dyes, Procedures, and Uses
Recommended Products
Online Inquiry