
AF568 NHS ester
| Catalog Number | R01-0041 |
| Category | Alexa Fluor |
| Molecular Formula | C49H63N5O13S2 |
| Molecular Weight | 994.18 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
AF568 is a synthetic fluorophore. The excitation peak of AF568 lies at 572 nm and its emission peak is at 598 nm. It can be excited using a 561 nm laser. AF568 is spectrally similar to TF4 (Tide Fluor™ 4), and sulfo-Cyanine3.5 dyes.,As AF568 NHS Ester can be conjugated with proteins and peptides, it is recommended for stable signal generation in imaging, including Western Blotting, fluorescence microscopy, and flow cytometry.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | 5-(2,5-dioxopyrrolidin-1-yl)oxycarbonyl-2-[7,7,19,19-tetramethyl-9,17-bis(sulfonatomethyl)-2-oxa-20-aza-6-azoniapentacyclo[12.8.0.03,12.05,10.016,21]docosa-1(14),3,5,8,10,12,15,17,21-nonaen-13-yl]benzoate;triethylazanium |
| SMILES | CC[NH+](CC)CC.CC[NH+](CC)CC.CC1(C=C(C2=CC3=C(C=C2N1)OC4=CC5=[NH+]C(C=C(C5=CC4=C3C6=C(C=C(C=C6)C(=O)ON7C(=O)CCC7=O)C(=O)[O-])CS(=O)(=O)[O-])(C)C)CS(=O)(=O)[O-])C |
| InChI | InChI=1S/C37H33N3O13S2.2C6H15N/c1-36(2)14-19(16-54(46,47)48)22-10-25-29(12-27(22)38-36)52-30-13-28-23(20(17-55(49,50)51)15-37(3,4)39-28)11-26(30)33(25)21-6-5-18(9-24(21)34(43)44)35(45)53-40-31(41)7-8-32(40)42;2*1-4-7(5-2)6-3/h5-6,9-15,38H,7-8,16-17H2,1-4H3,(H,43,44)(H,46,47,48)(H,49,50,51);2*4-6H2,1-3H3 |
| InChIKey | YRFFGLVXBMUQQI-UHFFFAOYSA-N |
| Solubility | Good in water, DMSO, DMF |
| Appearance | Dark colored solid |
Product Specification
| CF260 | 0.4 |
| CF280 | 0.32 |
| Fluorescence Quantum Yield | 0.912 |
| Mass Spec M+ Increment | 676.1 |
| Excitation | 572 |
| Emission | 598 |
| Storage | Storage: 12 months after receival at -20 °C in the Dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
AF568 NHS ester is a reactive Alexa Fluor 568-class dye formulated as an N-hydroxysuccinimide (NHS) ester, enabling efficient covalent labeling of primary amines on proteins, peptides, and other amine-bearing biomolecules. Its orange-red fluorescence is widely used for fluorescence microscopy, flow cytometry, and fluorescence-based assays where stable dye conjugates are required. The NHS ester reactivity supports straightforward preparation of fluorescent conjugates for downstream imaging and analytical workflows.
1. Protein And Antibody Labeling
AF568 NHS ester is frequently used by protein chemistry and antibody conjugation groups to generate fluorescently labeled antibodies, affinity reagents, and protein standards for imaging and binding assays. Because the NHS ester targets primary amines, it supports labeling of lysine residues and N-terminal groups on antibodies and recombinant proteins, producing conjugates that are commonly incorporated into immunofluorescence workflows, western blot-adjacent fluorescence readouts, and microscopy-based localization studies. Researchers also use the resulting AF568-labeled proteins as fluorescent tracers in biomolecular interaction experiments where covalent attachment helps reduce dye loss during washing steps.
2. Fluorescence Microscopy Staining
AF568 NHS ester is used in fluorescence microscopy workflows to visualize amine-containing targets in fixed-cell or fixed-sample preparations, including labeled extracellular proteins, extracellular matrix components, and immunostained structures. Imaging groups typically prepare AF568 conjugates to match the labeling chemistry of their primary binders (e.g., labeled secondary antibodies or AF568-tagged protein probes), enabling multicolor staining strategies when paired with spectrally compatible fluorophores. The covalent NHS ester labeling approach supports consistent staining across slides and helps maintain signal during imaging and post-stain handling.
3. Flow Cytometry Conjugate Preparation
AF568 NHS ester supports fluorescent labeling for flow cytometry reagent development by enabling covalent attachment of AF568 to amine-bearing proteins used as detection reagents or assay components. Cytometry users commonly generate AF568-labeled antibodies or protein conjugates for cell-surface or intracellular staining workflows, followed by instrument readout in the appropriate fluorescence detection channel for the dye's excitation/emission profile. Covalent dye attachment is particularly valued in multiplex panels where reagents must withstand repeated washing and consistent staining conditions to produce reproducible fluorescence signals across samples.
4. Fluorescent Bioassay Reagent Development
AF568 NHS ester is applied in fluorescence assay development to prepare labeled components used as reporters, tracers, or readout reagents in binding and uptake studies. Assay developers often conjugate AF568 to proteins, peptides, or other primary-amine containing assay reagents to create fluorescent substrates or fluorescently tagged partners for quantification by plate readers or imaging systems. The NHS ester functionality allows researchers to tune labeling to their assay format by preparing defined fluorescent conjugates that can be incorporated into standardized protocols for relative fluorescence measurements.
Computed Properties
| Hydrogen Bond Donor Count | 4 |
| Hydrogen Bond Acceptor Count | 14 |
| Rotatable Bond Count | 12 |
| Exact Mass | 993.38637943 g/mol |
| Monoisotopic Mass | 993.38637943 g/mol |
| Topological Polar Surface Area | 279Ų |
| Heavy Atom Count | 69 |
| Formal Charge | 0 |
| Complexity | 2040 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 3 |
| Compound Is Canonicalized | Yes |
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