
sBADA
| Catalog Number | A21-0011 |
| Category | Other Cell Fluorescent Probes |
| Molecular Formula | C17H20BF2N4O6S.Na.C2HF3O2 |
| Molecular Weight | 594.25 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
sBADA is a green sulfonated BODIPY-FL 3-amino-D-alanine (sBADA) or fluorescent D-amino acid (FFDA). Labels peptidoglycans in live bacteria. Sulfonated from of BADA with increased hydrophilicity.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Synonyms | Sodium (R)-3-(3-((2-amino-2-carboxyethyl)amino)-3-oxopropyl)-5,5-difluoro-7,9-dimethyl-2-sulfonato-5H-dipyrrolo[1,2-c:2',1'-f][1,3,2]diazaborinin-4-ium-5-uide trifluoroacetate |
| Purity | ≥95% (HPLC) |
| IUPAC Name | sodium;4-[3-[[(2R)-2-amino-2-carboxyethyl]amino]-3-oxopropyl]-2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaene-5-sulfonate;2,2,2-trifluoroacetic acid |
| SMILES | [B-]1(N2C(=CC(=C2C=C3[N+]1=C(C(=C3)S(=O)(=O)[O-])CCC(=O)NCC(C(=O)O)N)C)C)(F)F.C(=O)(C(F)(F)F)O.[Na+] |
| InChI | InChI=1S/C17H21BF2N4O6S.C2HF3O2.Na/c1-9-5-10(2)23-14(9)6-11-7-15(31(28,29)30)13(24(11)18(23,19)20)3-4-16(25)22-8-12(21)17(26)27;3-2(4,5)1(6)7;/h5-7,12H,3-4,8,21H2,1-2H3,(H,22,25)(H,26,27)(H,28,29,30);(H,6,7);/q;;+1/p-1/t12-;;/m1../s1 |
| InChIKey | CDWMQIYWYNKBIM-CURYUGHLSA-M |
| Solubility | DMSO |
Product Specification
| Excitation | 490 |
| Emission | 510 |
| Storage | Store at -20°C |
Application
sBADA is a fluorogenic, activity-responsive labeling reagent used in fluorescence-based chemical biology workflows to visualize and quantify biomolecular processes associated with nucleophilic and electrophilic reactivity in aqueous systems. Its design supports background-controlled signal generation for microscopy and plate-based readouts, making it a practical tool for researchers developing fluorescent assays, imaging probes, and labeling strategies where low background and robust fluorescence contrast are important.
1. Fluorescent Activity Assays
sBADA is commonly used by chemical biology and assay development teams to monitor fluorescence changes that report on reaction progress in enzyme-coupled or activity-associated labeling workflows. In these formats, the reagent is incorporated as a fluorescent reporter so that signal emergence tracks the experimental condition being varied, enabling end-point and time-course measurements in multiwell plates and fluorescence readers.
2. Fluorescence Microscopy Labeling
sBADA supports fluorescence microscopy workflows where researchers need a turn-on style labeling readout to track reactive biomolecular events in fixed experimental preparations or controlled labeling environments. Imaging teams use the reagent to generate spatially resolved fluorescence contrast that can be correlated with cellular or biomolecular structures present in the sample, supporting qualitative localization studies and quantitative image analysis.
3. Probe Construction Workflows
sBADA is frequently adopted in fluorescent probe development efforts where a fluorogenic reporter is required as part of a larger chemical probe or labeling system. Researchers integrate the reagent into probe architectures for downstream conjugate studies, including workflows where fluorescence is used as the readout for successful labeling, functionalization, or reaction completion during probe screening and optimization.
4. Flow Cytometry Signal Readout
sBADA is used by flow cytometry practitioners to create fluorescence-positive populations in labeling experiments where the reagent's signal generation provides assay-dependent contrast. In these applications, the reagent is incorporated into staining or reaction workflows so that fluorescence readout can be quantified at the single-cell level using standard cytometry channels matched to the reagent's emission output.
Computed Properties
| Hydrogen Bond Donor Count | 4 |
| Hydrogen Bond Acceptor Count | 15 |
| Rotatable Bond Count | 7 |
| Exact Mass | 594.0991001 g/mol |
| Monoisotopic Mass | 594.0991001 g/mol |
| Topological Polar Surface Area | 203Ų |
| Heavy Atom Count | 39 |
| Formal Charge | 0 |
| Complexity | 1100 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 1 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 3 |
| Compound Is Canonicalized | Yes |
Recommended Services
Recommended Articles
- Hoechst Dyes: Definition, Structure, Mechanism and Applications
- Mastering the Spectrum: A Comprehensive Guide to Cy3 and Cy5 Dyes
- Fluorescent Probes: Definition, Structure, Types and Application
- Fluorescent Dyes: Definition, Mechanism, Types and Application
- Coumarin Dyes: Definition, Structure, Benefits, Synthesis and Uses
- Unlocking the Power of Fluorescence Imaging: A Comprehensive Guide
- Cell Imaging: Definitions, Systems, Protocols, Dyes, and Applications
- Lipid Staining: Definition, Principles, Methods, Dyes, and Uses
- Flow Cytometry: Definition, Principles, Protocols, Dyes, and Uses
- Nucleic Acid Staining: Definition, Principles, Dyes, Procedures, and Uses
Recommended Products
Online Inquiry