
DBCO-PEG2-NHS ester | CAS 2585653-12-7
| Catalog Number | R01-0431 |
| Category | Cycloalkyne Dyes (DBCO) |
| Molecular Formula | C30H31N3O8 |
| Molecular Weight | 561.59 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
DBCO-PEG2-NHS ester is a bioorthogonal ADC linker combining DBCO reactive group with PEG2 spacer and NHS ester. It enables efficient site-specific payload conjugation via SPAAC click chemistry, enhancing antibody-drug conjugate stability and efficacy.
Chemical Information
Product Specification
Application
Computed Properties
Patents
Chemical Information
| IUPAC Name | (2,5-dioxopyrrolidin-1-yl) 3-[2-[2-[[4-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-4-oxobutanoyl]amino]ethoxy]ethoxy]propanoate |
| SMILES | C1CC(=O)N(C1=O)OC(=O)CCOCCOCCNC(=O)CCC(=O)N2CC3=CC=CC=C3C#CC4=CC=CC=C42 |
| InChI | InChI=1S/C30H31N3O8/c34-26(31-16-18-40-20-19-39-17-15-30(38)41-33-28(36)13-14-29(33)37)11-12-27(35)32-21-24-7-2-1-5-22(24)9-10-23-6-3-4-8-25(23)32/h1-8H,11-21H2,(H,31,34) |
| InChIKey | WEMCNVHTFXFLHG-UHFFFAOYSA-N |
| Appearance | Yellow to brown Oil |
Product Specification
| Storage | -20 °C |
Application
DBCO-PEG2-NHS ester is a difluorobenzocyclooctyne (DBCO) functionalized polyethylene glycol (PEG) NHS ester designed for strain-promoted azide–alkyne cycloaddition (SPAAC) workflows and efficient amine-reactive labeling. The reagent combines a stable NHS ester handle for coupling to primary amines with a cyclooctyne click group that enables bioorthogonal conjugation to azide-bearing partners under mild conditions. Its PEG spacer improves solubility and reduces steric constraints, making it widely used in probe and biomaterial functionalization where controlled attachment of DBCO to proteins, peptides, and polymer surfaces is required.
1. Protein And Peptide Labeling
DBCO-PEG2-NHS ester is commonly used to install DBCO onto proteins and peptides via NHS ester reactivity with lysine side chains and N-terminal amines, generating azide-reactive bioconjugates for downstream click coupling. Researchers frequently employ this reagent to prepare antibody fragments, enzyme conjugates, and receptor-binding ligands that are later linked to azide-functional imaging agents, affinity tags, or multivalent scaffolds. The PEG2 spacer helps maintain colloidal stability and can improve accessibility of the DBCO moiety during subsequent SPAAC reactions, which is particularly valuable when conjugating in complex labeling buffers or when targeting bulky azide-bearing constructs.
2. Surface and Biomaterial Functionalization
DBCO-PEG2-NHS ester is well suited for introducing click-ready DBCO groups onto amine-containing biomaterial surfaces, including PEGylated coatings, hydrogel matrices, and functionalized polymer films that present accessible primary amines. In materials and biomaterials research, the NHS ester provides a convenient route to immobilize DBCO onto substrates prior to coupling with azide-bearing biomolecules, such as cell-adhesion peptides, growth factor mimetics, or fluorescent reporters. This approach supports modular assembly of patterned or layered materials where spatially controlled click attachment is achieved by reacting the surface-bound DBCO with azide partners.
3. Multivalent Probe Construction
DBCO-PEG2-NHS ester is frequently used to build multivalent chemical probes by first generating DBCO-functional intermediates on a carrier (for example, a protein scaffold, dendrimer-like polymer, or polymer backbone) and then performing SPAAC coupling to azide-functional reporters. The PEG2 linker contributes to improved solubility and spacing between the conjugation point and the DBCO handle, which can be important for preserving binding or recognition behavior of the azide-derived components used to generate imaging or detection reagents. This two-step design is widely adopted in chemical biology for assembling probe libraries with defined valency and for swapping azide-bearing modules without re-optimizing the initial amine-labeling step.
4. Diagnostic Reagent Development
DBCO-PEG2-NHS ester is used in the development of diagnostic research reagents that rely on modular conjugation between DBCO-bearing capture or labeling components and azide-functional detection elements. Laboratories often prepare DBCO-tagged affinity reagents, such as biotin-like binders or antibody-derived binders, by NHS ester coupling to amines, followed by SPAAC attachment to azide-bearing fluorophores, enzyme substrates, or particulate labels used in assay workflows. The reagent’s PEG spacer and NHS chemistry facilitate consistent handle installation on amine-rich reagents, enabling streamlined generation of assay-ready conjugates for reagent screening and method development.
Computed Properties
| XLogP3 | 0.7 |
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 8 |
| Rotatable Bond Count | 14 |
| Exact Mass | 561.21111496 g/mol |
| Monoisotopic Mass | 561.21111496 g/mol |
| Topological Polar Surface Area | 132?2 |
| Heavy Atom Count | 41 |
| Formal Charge | 0 |
| Complexity | 1020 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
Patents
| Publication Number | Title | Priority Date |
|---|---|---|
| WO-2021016525-A1 | Methods for tagging and encoding of pre-existing compound libraries | 2019-07-25 |
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