
BDP R6G DBCO
| Catalog Number | R09-0003 |
| Category | BODIPY |
| Molecular Formula | C39H35N4BF2O2 |
| Molecular Weight | 640.53 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP R6G is a bright and photostable substitute for Rhodamine 6G (R6G). BDP stands for borondipyrromethene, a versatile fluorophore scaffold that is specially tuned in this molecule to match absorption and emission of R6G.DBCO (azodibenzocyclooctyne) is a strained cyclic alkyne that reacts rapidly with azides giving rise to stable triazoles. The reaction does not require to use any catalyst; it is tolerant to most biologically important functional groups.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | N-[6-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-6-oxohexyl]-3-(2,2-difluoro-12-phenyl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)propanamide |
| SMILES | [B-]1(N2C(=CC=C2CCC(=O)NCCCCCC(=O)N3CC4=CC=CC=C4C#CC5=CC=CC=C53)C=C6[N+]1=C(C=C6)C7=CC=CC=C7)(F)F |
| InChI | InChI=1S/C39H35BF2N4O2/c41-40(42)45-33(20-21-34(45)27-35-22-24-37(46(35)40)30-12-3-1-4-13-30)23-25-38(47)43-26-10-2-5-17-39(48)44-28-32-15-7-6-11-29(32)18-19-31-14-8-9-16-36(31)44/h1,3-4,6-9,11-16,20-22,24,27H,2,5,10,17,23,25-26,28H2,(H,43,47) |
| InChIKey | IGGUTYGDIYZZDQ-UHFFFAOYSA-N |
| Solubility | good in DMF, DMSO, DCM |
| Appearance | red to brown solid |
Product Specification
| Fluorescence Quantum Yield | 0.19 |
| Excitation | 530 |
| Emission | 548 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP R6G DBCO is a DBCO-functionalized fluorescent labeling reagent built from a BDP-derived rhodamine-like dye scaffold, enabling copper-free strain-promoted azide-alkyne cycloaddition (SPAAC) for rapid conjugation. In fluorescence workflows, the dye's bright visible emission supports microscopy and flow-based readouts, while the DBCO handle is used to install the fluorophore onto biomolecules, affinity reagents, and material surfaces through click chemistry.
1. Biomolecule Labeling
BDP R6G DBCO is used to fluorescently tag proteins, peptides, and other azide-bearing biomolecules for tracking, binding studies, and reagent characterization. Researchers commonly incorporate the DBCO functionality to generate labeled conjugates without copper, supporting workflows where copper-free conditions are preferred for sensitive proteins or time-sensitive labeling. The resulting BDP R6G-labeled conjugates are then used in fluorescence microscopy and plate-based fluorescence assays to visualize localization, monitor conjugate behavior, or quantify labeling outcomes.
2. Fluorescence Microscopy Imaging
BDP R6G DBCO is frequently employed as a click-installable fluorophore for cellular and biomaterial imaging experiments where controlled dye density and modular conjugate construction are required. By reacting the DBCO group with azide-functionalized targeting ligands, cell-interacting peptides, or polymer/biomaterial coatings, users generate fluorescent imaging reagents that can be localized to specific structures or interfaces established by the azide-bearing component. The BDP R6G emission supports conventional fluorescence microscopy setups for qualitative imaging of labeled targets and for comparative imaging across experimental conditions.
3. Flow Cytometry Conjugates
BDP R6G DBCO supports preparation of fluorescent conjugates used in flow cytometry to quantify labeling of cell-associated targets and to analyze reagent binding in suspension. In these workflows, the DBCO handle is leveraged to attach the fluorophore to azide-modified antibodies, affinity reagents, or other cell-interacting constructs, enabling consistent conjugate generation for multistep staining panels. The bright dye signal is then read on standard flow cytometers with appropriate laser/filter configurations to compare fluorescence intensity distributions across samples.
4. Surface And Polymer Functionalization
BDP R6G DBCO is applied to fluorescently functionalize azide-containing surfaces and polymers used in biomaterials research, including coatings, hydrogels, and assay substrates. Researchers use the SPAAC-compatible DBCO group to covalently incorporate the BDP R6G fluorophore into material systems where stable attachment and spatially uniform labeling are important for imaging or material characterization. The resulting fluorescent materials are used to visualize surface coverage, track material interactions, and provide labeled readouts in fluorescence-based assays and microscopy studies.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 5 |
| Rotatable Bond Count | 10 |
| Exact Mass | 640.2821129 g/mol |
| Monoisotopic Mass | 640.2821129 g/mol |
| Topological Polar Surface Area | 57.4Ų |
| Heavy Atom Count | 48 |
| Formal Charge | 0 |
| Complexity | 1370 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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