
DBCO-NHCO-PEG4-t-butyl ester
| Catalog Number | R01-0384 |
| Category | Cycloalkyne Dyes (DBCO) |
| Molecular Formula | C34H44N2O8 |
| Molecular Weight | 608.7 |
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Product Introduction
DBCO-NHCO-PEG4-t-butyl ester
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | 98% |
| IUPAC Name | tert-butyl 3-[2-[2-[2-[3-[[3-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-3-oxopropyl]amino]-3-oxopropoxy]ethoxy]ethoxy]ethoxy]propanoate |
| SMILES | CC(C)(C)OC(=O)CCOCCOCCOCCOCCC(=O)NCCC(=O)N1CC2=CC=CC=C2C#CC3=CC=CC=C31 |
| InChI | InChI=1S/C34H44N2O8/c1-34(2,3)44-33(39)16-19-41-21-23-43-25-24-42-22-20-40-18-15-31(37)35-17-14-32(38)36-26-29-10-5-4-8-27(29)12-13-28-9-6-7-11-30(28)36/h4-11H,14-26H2,1-3H3,(H,35,37) |
| InChIKey | YSNXYYQVJQQNMB-UHFFFAOYSA-N |
| Solubility | DMSO, DCM, DMF |
Product Specification
| Storage | -20 °C |
Application
DBCO-NHCO-PEG4-t-butyl ester is a cyclooctyne (DBCO) click chemistry reagent designed for strain-promoted azide–alkyne cycloaddition (SPAAC) applications. The molecule couples a DBCO reactive handle with a PEG4 spacer and a t-butyl ester masked as a protected carboxylate, enabling downstream functionalization after conjugation workflows. This structure is commonly leveraged in bioconjugation and surface/material labeling where SPAAC compatibility, aqueous handling, and controlled presentation of a functional group are important for building imaging probes, affinity reagents, and PEGylated materials.
1. Protein And Peptide Labeling
DBCO-NHCO-PEG4-t-butyl ester is used to introduce a SPAAC-reactive DBCO handle onto biomolecules while maintaining a PEG4-derived hydrophilic spacing that can reduce steric congestion during subsequent conjugation steps. Researchers commonly incorporate the reagent into labeling workflows for proteins and peptides to generate azide-bearing targets for modular assembly with imaging tags, affinity ligands, or secondary reporters. The t-butyl ester functionality is particularly useful when a protected carboxylate is desired during early stages of bioconjugation, followed by later deprotection to enable carboxylate-mediated coupling or further derivatization.
2. Antibody And Ligand Conjugates
DBCO-NHCO-PEG4-t-butyl ester supports modular construction of antibody and binding-protein conjugates by providing a stable DBCO moiety that reacts efficiently with azide-functional partners under copper-free conditions. In research settings, it is frequently used to prepare azide-reactive or DBCO-functional intermediates for assembling multivalent constructs, such as antibody–probe hybrids and antibody–polymer conjugates, where spacing and solubility strongly influence labeling performance. The PEG4 spacer helps maintain accessibility of the reactive handle, while the protected ester group offers a practical handle for downstream chemical modification during conjugate optimization.
3. Surface And Material Functionalization
DBCO-NHCO-PEG4-t-butyl ester is applied to functionalize polymeric surfaces, nanoparticles, and biomaterial interfaces where SPAAC provides a robust route to attach azide-containing coatings or biomolecule layers without copper catalysts. The PEG4 segment improves wetting and reduces nonspecific interactions, which is valuable for creating reproducible, low-background labeling on complex surfaces. After conjugation, the t-butyl ester can be used as a protected carboxylate precursor to support subsequent coupling chemistry, enabling layered assembly strategies for diagnostic reagent platforms, affinity surfaces, and engineered material scaffolds.
4. Molecular Imaging Probe Assembly
DBCO-NHCO-PEG4-t-butyl ester is widely used as a building block for preparing imaging-related probes and reporter conjugates that rely on copper-free click coupling to azide-bearing components. The DBCO handle enables rapid attachment to azide-functional dyes, chelators, or reporter scaffolds in probe construction workflows, while the PEG4 spacer supports improved dispersion and reduced aggregation in labeling formulations. The protected ester functionality offers flexibility for introducing additional chemical functionality after initial conjugate formation, which can be advantageous when optimizing probe solubility, linker length, or subsequent attachment of secondary functional groups for assay-ready reagent design.
Computed Properties
| XLogP3 | 2.3 |
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 8 |
| Rotatable Bond Count | 20 |
| Exact Mass | 608.30976637 g/mol |
| Monoisotopic Mass | 608.30976637 g/mol |
| Topological Polar Surface Area | 113Ų |
| Heavy Atom Count | 44 |
| Formal Charge | 0 |
| Complexity | 952 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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