
DBCO-C3-PEG4-amine
| Catalog Number | R01-0394 |
| Category | Cycloalkyne Dyes (DBCO) |
| Molecular Formula | C₃₃H₄₃N₃O₈ |
| Molecular Weight | 609.71 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
DBCO-C3-PEG4-amine is a polyethylene glycol (PEG)-based PROTAC linker. DBCO-C3-PEG4-amine can be used in the synthesis of a series of PROTACs.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | 98% |
| IUPAC Name | 3-[[4-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-4-oxobutanoyl]amino]propyl 3-[2-[2-[2-(2-aminoethoxy)ethoxy]ethoxy]ethoxy]propanoate |
| SMILES | C1C2=CC=CC=C2C#CC3=CC=CC=C3N1C(=O)CCC(=O)NCCCOC(=O)CCOCCOCCOCCOCCN |
| InChI | InChI=1S/C33H43N3O8/c34-15-19-41-21-23-43-25-24-42-22-20-40-18-14-33(39)44-17-5-16-35-31(37)12-13-32(38)36-26-29-8-2-1-6-27(29)10-11-28-7-3-4-9-30(28)36/h1-4,6-9H,5,12-26,34H2,(H,35,37) |
| InChIKey | LUQYPCXYQQOMEO-UHFFFAOYSA-N |
| Solubility | DMSO, DCM, DMF |
Product Specification
| Storage | Please store the product under the recommended conditions in the Certificate of Analysis. |
Application
DBCO-C3-PEG4-amine is a dibenzocyclooctyne (DBCO) functionalized, PEGylated primary amine building block designed for strain-promoted azide–alkyne cycloaddition (SPAAC) click chemistry. The reagent combines a highly reactive DBCO moiety with a flexible PEG4 linker and a terminal amine handle, enabling efficient conjugation to azide-bearing biomolecules, surfaces, or materials while preserving solubility and minimizing steric constraints. Its amine functionality further supports downstream coupling strategies for preparing labeled probes, functional coatings, and PEG-based bioconjugates used across chemical biology, diagnostics research, and materials science workflows.
1. Bioconjugation With Azides
DBCO-C3-PEG4-amine is widely used to attach PEG-spaced functional groups to azide-functionalized targets such as azide-tagged proteins, peptides, antibodies, nucleic-acid constructs, and cell-surface labeling reagents. Researchers value the SPAAC compatibility because it enables copper-free click coupling under mild conditions, which is particularly beneficial for sensitive biomolecules and for workflows that require straightforward conjugation without additional metal-handling steps. The PEG4 spacer helps maintain accessibility of the terminal amine after conjugation, supporting subsequent derivatization for probe generation, affinity handles, or multivalent assembly.
2. Fluorescent And Imaging Probes
DBCO-C3-PEG4-amine serves as a practical connector for building fluorescent and molecular imaging reagents by linking DBCO-bearing conjugates to azide-functional dyes, imaging scaffolds, or azide-labeled targeting components. The PEGylated architecture improves aqueous compatibility and can reduce nonspecific interactions during probe preparation, which is important for developing robust labeling reagents for microscopy, flow cytometry, and imaging-focused assay development. The terminal amine enables additional attachment of chelators, reactive groups, or secondary labeling components, allowing probe libraries to be assembled with consistent linker spacing.
3. Surface Functionalization And Coatings
DBCO-C3-PEG4-amine is commonly employed to functionalize azide-presenting surfaces and polymeric materials, including azide-modified hydrogels, bead surfaces, and patterned substrates used in biointerfaces research. The reagent’s PEG4 chain supports stable presentation of reactive amine functionality at the material interface, which is useful for creating immobilized capture reagents, antifouling-like surface architectures, and modular platforms for subsequent coupling chemistry. In materials science and chemical biology, this approach is frequently used to generate reproducible surface chemistries for binding studies, immobilized assay formats, and spatially controlled reagent immobilization.
4. Linker For Multistep Labeling
DBCO-C3-PEG4-amine is an effective intermediate for multistep bioconjugation schemes where a click handle must be introduced first and additional functionality installed later. The DBCO group enables rapid SPAAC attachment to azide-bearing components, while the terminal amine provides a versatile site for coupling to activated esters, isothiocyanates, aldehyde-derived chemistries, or other amine-reactive partners used to create final probe formats. This design is particularly useful in research settings that require modular construction of conjugates, such as preparing reagent panels with consistent PEG spacing, orthogonal functional group placement, and scalable workflows for reagent synthesis and assay development.
Computed Properties
| XLogP3 | 0.7 |
| Hydrogen Bond Donor Count | 2 |
| Hydrogen Bond Acceptor Count | 9 |
| Rotatable Bond Count | 22 |
| Exact Mass | 609.30501534 g/mol |
| Monoisotopic Mass | 609.30501534 g/mol |
| Topological Polar Surface Area | 139Ų |
| Heavy Atom Count | 44 |
| Formal Charge | 0 |
| Complexity | 919 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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