Cyanine5 DBCO
Catelog Number | R09-0005 |
Category | Cycloalkyne Dyes (DBCO) |
Molecular Formula | C53H59N4F6O2P |
Molecular Weight | 929.03 |
Catalog Number | Size | Price | Quantity |
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R09-0005 | -- | $-- |
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Product Introduction
A derivative of Cyanine5 red-emitting fluorophore possessing DBCO (dibenzocyclooctyne, also known as ADIBO, azodibenzocyclooctyne) group for copper free Click chemistry.Strained cycloalkynes, such as cyclooctynes, react with azides very rapidly in the absence of copper catalyst in a strain promoted alkyne azide cycloaddition (spAAC). This reaction is very fast, mild, and biocompatible.
Chemical Information |
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Purity | NMR 1H, HPLC-MS (95%) |
IUPAC Name | N-[6-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-6-oxohexyl]-6-[3,3-dimethyl-2-[5-(1,3,3-trimethylindol-1-ium-2-yl)penta-2,4-dienylidene]indol-1-yl]hexanamide;hexafluorophosphate |
Canonical SMILES | CC1(C2=CC=CC=C2[N+](=C1C=CC=CC=C3C(C4=CC=CC=C4N3CCCCCC(=O)NCCCCCC(=O)N5CC6=CC=CC=C6C#CC7=CC=CC=C75)(C)C)C)C.F[P-](F)(F)(F)(F)F |
InChI | InChI=1S/C53H58N4O2.F6P/c1-52(2)43-26-16-19-29-46(43)55(5)48(52)31-9-6-10-32-49-53(3,4)44-27-17-20-30-47(44)56(49)38-22-8-11-33-50(58)54-37-21-7-12-34-51(59)57-39-42-25-14-13-23-40(42)35-36-41-24-15-18-28-45(41)57;1-7(2,3,4,5)6/h6,9-10,13-20,23-32H,7-8,11-12,21-22,33-34,37-39H2,1-5H3;/q;-1/p+1 |
InChI Key | YPXNDZYXPDFNEL-UHFFFAOYSA-O |
Solubility | good in DMF, DMSO, chlorinated organic solvents, practically insoluble in water (<1 uM, < 1 mg/L) |
Appearance | dark blue solid |
Product Specification |
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ε, L⋅mol-1⋅cm-1 | 250000 |
Fluorescence Quantum Yield | 0.2 |
Excitation | 646 |
Emission | 662 |
Storage | 12 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Computed Properties | |
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Hydrogen Bond Donor Count | 1 |
Hydrogen Bond Acceptor Count | 10 |
Rotatable Bond Count | 15 |
Exact Mass | 928.42798311 g/mol |
Monoisotopic Mass | 928.42798311 g/mol |
Topological Polar Surface Area | 55.7Ų |
Heavy Atom Count | 66 |
Formal Charge | 0 |
Complexity | 1720 |
Isotope Atom Count | 0 |
Defined Atom Stereocenter Count | 0 |
Undefined Atom Stereocenter Count | 0 |
Defined Bond Stereocenter Count | 0 |
Undefined Bond Stereocenter Count | 3 |
Covalently-Bonded Unit Count | 2 |
Compound Is Canonicalized | Yes |
Literatures
PMID | Publication Date | Title | Journal |
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8464 | 1976-09-10 | Identification of the covalently bound flavin of thiamin dehydrogenase | The Journal of biological chemistry |
Applications of Fluorescent Probes & Dyes
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