
Acid-Cy7-NHS ester
| Catalog Number | A17-0183 |
| Category | Cyanine7 |
| Molecular Formula | C46H55Cl2N3O6 |
| Molecular Weight | 816.9 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
Acid-Cy7 NHS ester, an improved analog of Cy7? fluorophore, contains an acid group and an NHS ester. This reagent allows labeled biomolecules and dye labeled molecules to be subsequently used for various research and drug design related experiments. The carboxylic acid can react with primary amines in the presence of activators such as HATU and EDC. The NHS ester can also react with primary amines.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | 98% |
| IUPAC Name | 6-[2-[(E)-2-[(3E)-2-chloro-3-[(2E)-2-[1-[6-(2,5-dioxopyrrolidin-1-yl)oxy-6-oxohexyl]-3,3-dimethylindol-2-ylidene]ethylidene]cyclohexen-1-yl]ethenyl]-3,3-dimethylindol-1-ium-1-yl]hexanoic acid;chloride |
| SMILES | CC1(C2=CC=CC=C2[N+](=C1C=CC3=C(C(=CC=C4C(C5=CC=CC=C5N4CCCCCC(=O)ON6C(=O)CCC6=O)(C)C)CCC3)Cl)CCCCCC(=O)O)C.[Cl-] |
| InChI | InChI=1S/C46H54ClN3O6.ClH/c1-45(2)34-18-9-11-20-36(34)48(30-13-5-7-22-42(53)54)38(45)26-24-32-16-15-17-33(44(32)47)25-27-39-46(3,4)35-19-10-12-21-37(35)49(39)31-14-6-8-23-43(55)56-50-40(51)28-29-41(50)52;/h9-12,18-21,24-27H,5-8,13-17,22-23,28-31H2,1-4H3;1H |
| InChIKey | OSTXPBWYJUDMOU-UHFFFAOYSA-N |
Product Specification
| Storage | -20 °C |
Application
Acid-Cy7-NHS ester is a reactive Cy7-family near-infrared fluorescent dye supplied as an NHS ester, enabling efficient covalent labeling of primary amines on proteins, peptides, and other amine-containing biomolecules. Its long-wavelength emission supports low-background fluorescence imaging workflows where red/NIR detection is preferred, and the dye's activated ester form makes it well matched to conjugate preparation for microscopy, imaging, and fluorescence-based assays.
1. Protein Conjugate Labeling
Acid-Cy7-NHS ester is widely used by bioconjugation groups to generate fluorescently labeled proteins and antibody conjugates for NIR imaging and fluorescence-based readouts. Researchers typically employ the NHS ester to attach the dye to lysine residues on target proteins, producing stable amide-linked conjugates that can be used in binding studies, tracer experiments, and imaging reagent development. The Cy7 spectral region is particularly useful when background autofluorescence is a concern, such as in complex biological samples or when multiplexing with visible fluorophores.
2. Fluorescence Imaging Probes
Acid-Cy7-NHS ester supports the construction of NIR fluorescence imaging probes for cellular and molecular imaging workflows in microscopy and whole-sample imaging setups that detect in the red/NIR range. Conjugates prepared from amine-bearing targeting scaffolds, such as peptides, protein binders, or other biomolecular carriers, are used to visualize localization and distribution in imaging experiments. In these applications, the NHS ester functionality simplifies probe generation by providing a direct route to covalent dye conjugation, enabling consistent probe handling compared with noncovalent staining approaches.
3. Biomolecule Tracking Assays
Acid-Cy7-NHS ester is used to prepare fluorescent tracers for quantitative fluorescence assays where covalent labeling improves assay robustness and reduces dye loss during washing or incubation steps. Conjugates derived from amine-containing biomolecules are commonly incorporated into binding/interaction assays, uptake or transport studies, and reagent development for fluorescence readouts that benefit from NIR excitation/emission detection. The activated NHS ester format helps streamline conjugate generation for assay development teams working with proteinaceous reagents and standardized labeling workflows.
4. Surface Coating And Immobilization
Acid-Cy7-NHS ester is also applied in biomaterials and surface functionalization workflows to introduce NIR fluorescence onto amine-rich surfaces and coatings. Researchers use the NHS ester to covalently attach the dye to amine-bearing polymers, hydrogel matrices, or other functional materials that present primary amines, creating fluorescently trackable surfaces for material characterization and imaging. This approach is useful when fluorescence labeling needs to remain associated with a solid support during handling, incubation, or repeated imaging.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 8 |
| Rotatable Bond Count | 17 |
| Exact Mass | 815.3467919 g/mol |
| Monoisotopic Mass | 815.3467919 g/mol |
| Topological Polar Surface Area | 107Ų |
| Heavy Atom Count | 57 |
| Formal Charge | 0 |
| Complexity | 1650 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 3 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
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