
Pyrene-PEG5-biotin
| Catalog Number | F08-0005 |
| Category | Pyrene Dyes |
| Molecular Formula | C₃₉H₅₀N₄O₈S |
| Molecular Weight | 734.90 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
Pyrene-PEG5-biotin is a polyethylene glycol (PEG)-based PROTAC linker. Pyrene-PEG5-biotin can be used in the synthesis of a series of PROTACs.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | 97% |
| IUPAC Name | N-[2-[2-[2-[2-[2-[2-[5-[(3aS,4S,6aR)-2-oxo-1,3,3a,4,6,6a-hexahydrothieno[3,4-d]imidazol-4-yl]pentanoylamino]ethoxy]ethoxy]ethoxy]ethoxy]ethoxy]ethyl]pyrene-1-carboxamide |
| SMILES | C1C2C(C(S1)CCCCC(=O)NCCOCCOCCOCCOCCOCCNC(=O)C3=C4C=CC5=CC=CC6=C5C4=C(C=C6)C=C3)NC(=O)N2 |
| InChI | InChI=1S/C39H50N4O8S/c44-34(7-2-1-6-33-37-32(26-52-33)42-39(46)43-37)40-14-16-47-18-20-49-22-24-51-25-23-50-21-19-48-17-15-41-38(45)31-13-11-29-9-8-27-4-3-5-28-10-12-30(31)36(29)35(27)28/h3-5,8-13,32-33,37H,1-2,6-7,14-26H2,(H,40,44)(H,41,45)(H2,42,43,46)/t32-,33-,37-/m0/s1 |
| InChIKey | ODIVXJVCOCDDJO-BMQPFVSWSA-N |
Product Specification
| Storage | Please store the product under the recommended conditions in the Certificate of Analysis. |
Application
Pyrene-PEG5-biotin is a PEGylated biotin conjugate bearing a pyrene hydrophobic anchor, enabling robust noncovalent association with pyrene-binding surfaces while retaining biotin for downstream streptavidin/avidin recognition. In fluorescence and materials workflows, the pyrene moiety provides strong aromatic fluorescence for tracking surface coverage and conjugate stability, while the biotin handle supports affinity-based immobilization, capture, and assay reagent construction.
1. Biomaterial Surface Functionalization
Pyrene-PEG5-biotin is used to functionalize polymeric and carbon-based materials, including hydrophobic coatings and many lab-made surface platforms, where pyrene anchors provide stable adsorption without harsh coupling steps. Researchers and biomaterials groups employ the biotin functionality to create streptavidin/avidin-compatible surfaces for immobilizing proteins, enzymes, or affinity reagents, while the pyrene fluorescence enables straightforward verification of coating uniformity and relative surface loading during method development.
2. Streptavidin-Based Probe Immobilization
Pyrene-PEG5-biotin supports affinity immobilization strategies in fluorescence labeling workflows by presenting a biotin moiety for strong binding to streptavidin or avidin conjugates. Chemical biology and assay development teams use it as a modular linker to attach fluorescent reporters, detection enzymes, or capture ligands to biotin-binding scaffolds, with the pyrene tag providing an internal fluorescent readout to monitor conjugate assembly and wash-out behavior in multi-step staining and assay preparation.
3. Fluorescent Surface Tracking Assays
Pyrene-PEG5-biotin is frequently incorporated into fluorescence microscopy and optical characterization workflows to track adsorption, diffusion, and retention of PEG-biotin layers on surfaces. The pyrene fluorophore enables visualization of where the linker resides, supporting optimization of coating protocols, comparative studies of surface chemistries, and quality control of functionalized substrates used in binding assays, microarray-style experiments, and materials screening.
Computed Properties
| XLogP3 | 3.4 |
| Hydrogen Bond Donor Count | 4 |
| Hydrogen Bond Acceptor Count | 9 |
| Rotatable Bond Count | 24 |
| Exact Mass | 734.33493574 g/mol |
| Monoisotopic Mass | 734.33493574 g/mol |
| Topological Polar Surface Area | 171Ų |
| Heavy Atom Count | 52 |
| Formal Charge | 0 |
| Complexity | 1120 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 3 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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