Cyanine5.5 azide
Catelog Number | F02-0011 |
Category | Cyanine |
Molecular Formula | C43H49ClN6O |
Molecular Weight | 701.34 |
Catalog Number | Size | Price | Quantity |
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F02-0011 | 10 mg | $698 |
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Product Introduction
This Cyanine5.5 labeling reagent is a dye azide for Click Chemistry, available as 10 mM solution in DMSO, or in solid form. The dye possesses far red / near infrared emission, which allows to use it for NIR live organism imaging. Cyanine5.5 can replace Cy5.5®, Alexa Fluor 680, and DyLight 680.
Chemical Information |
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Purity | NMR 1H, HPLC-MS (95%) |
IUPAC Name | N-(3-azidopropyl)-6-[1,1-dimethyl-2-[5-(1,1,3-trimethylbenzo[e]indol-3-ium-2-yl)penta-2,4-dienylidene]benzo[e]indol-3-yl]hexanamide;chloride |
Canonical SMILES | CC1(C(=[N+](C2=C1C3=CC=CC=C3C=C2)C)C=CC=CC=C4C(C5=C(N4CCCCCC(=O)NCCCN=[N+]=[N-])C=CC6=CC=CC=C65)(C)C)C.[Cl-] |
InChI | InChI=1S/C43H48N6O.ClH/c1-42(2)37(48(5)35-26-24-31-17-11-13-19-33(31)40(35)42)21-8-6-9-22-38-43(3,4)41-34-20-14-12-18-32(34)25-27-36(41)49(38)30-15-7-10-23-39(50)45-28-16-29-46-47-44;/h6,8-9,11-14,17-22,24-27H,7,10,15-16,23,28-30H2,1-5H3;1H |
InChI Key | KOVQVUIEVDGEDR-UHFFFAOYSA-N |
Solubility | soluble in organic solvents (DMSO, DMF, dichloromethane), practically insoluble in water (1.6 uM, 1.2 mg/L) |
Appearance | dark blue powder / solution |
Product Specification |
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ε, L⋅mol-1⋅cm-1 | 198000 |
Fluorescence Quantum Yield | 0.2 |
Excitation | 684 |
Emission | 710 |
Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Computed Properties | |
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Hydrogen Bond Donor Count | 1 |
Hydrogen Bond Acceptor Count | 5 |
Rotatable Bond Count | 13 |
Exact Mass | 700.3656379 g/mol |
Monoisotopic Mass | 700.3656379 g/mol |
Topological Polar Surface Area | 49.7Ų |
Heavy Atom Count | 51 |
Formal Charge | 0 |
Complexity | 1370 |
Isotope Atom Count | 0 |
Defined Atom Stereocenter Count | 0 |
Undefined Atom Stereocenter Count | 0 |
Defined Bond Stereocenter Count | 0 |
Undefined Bond Stereocenter Count | 3 |
Covalently-Bonded Unit Count | 2 |
Compound Is Canonicalized | Yes |
Applications of Fluorescent Probes & Dyes
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