Cyanine5.5 azide

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Cyanine5.5 azide

Cyanine5.5 azide

Catalog Number F02-0011
Category Cyanine5.5
Molecular Formula C43H49ClN6O
Molecular Weight 701.34
Catalog Number Size Price Quantity
F02-0011 10 mg $698

* Please be kindly noted products are not for therapeutic use. We do not sell to patients.

Product Introduction

Cyanine5.5 azide is a reactive fluorescent dye belonging to the cyanine family, characterized by its extended conjugated system that enables near-infrared fluorescence emission. This dye features an azide functional group, facilitating bioorthogonal conjugation through click chemistry reactions with alkynes, making it suitable for labeling biomolecules in complex biological systems. Cyanine5.5 azide is widely used in fluorescence imaging and flow cytometry applications, where its spectral properties support deep tissue penetration and reduced background interference.

  • Chemical Information

  • Product Specification

  • Application

  • Computed Properties

Chemical Information

Purity NMR 1H, HPLC-MS (95%)
IUPAC Name N-(3-azidopropyl)-6-[1,1-dimethyl-2-[5-(1,1,3-trimethylbenzo[e]indol-3-ium-2-yl)penta-2,4-dienylidene]benzo[e]indol-3-yl]hexanamide;chloride
SMILES CC1(C(=[N+](C2=C1C3=CC=CC=C3C=C2)C)C=CC=CC=C4C(C5=C(N4CCCCCC(=O)NCCCN=[N+]=[N-])C=CC6=CC=CC=C65)(C)C)C.[Cl-]
InChI InChI=1S/C43H48N6O.ClH/c1-42(2)37(48(5)35-26-24-31-17-11-13-19-33(31)40(35)42)21-8-6-9-22-38-43(3,4)41-34-20-14-12-18-32(34)25-27-36(41)49(38)30-15-7-10-23-39(50)45-28-16-29-46-47-44;/h6,8-9,11-14,17-22,24-27H,7,10,15-16,23,28-30H2,1-5H3;1H
InChIKey KOVQVUIEVDGEDR-UHFFFAOYSA-N
Solubility soluble in organic solvents (DMSO, DMF, dichloromethane), practically insoluble in water (1.6 uM, 1.2 mg/L)
Appearance dark blue powder / solution

Product Specification

ε, L⋅mol-1⋅cm-1 198000
Fluorescence Quantum Yield 0.2
Excitation 684
Emission 710
Storage 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate.

Application

Computed Properties

Hydrogen Bond Donor Count 1
Hydrogen Bond Acceptor Count 5
Rotatable Bond Count 13
Exact Mass 700.3656379 g/mol
Monoisotopic Mass 700.3656379 g/mol
Topological Polar Surface Area 49.7Ų
Heavy Atom Count 51
Formal Charge 0
Complexity 1370
Isotope Atom Count 0
Defined Atom Stereocenter Count 0
Undefined Atom Stereocenter Count 0
Defined Bond Stereocenter Count 0
Undefined Bond Stereocenter Count 3
Covalently-Bonded Unit Count 2
Compound Is Canonicalized Yes

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