
BDP TR tetrazine
| Catalog Number | R08-0005 |
| Category | BODIPY |
| Molecular Formula | C31H24N7BF2O2S |
| Molecular Weight | 607.44 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP TR dye tetrazine derivative for TCO ligation reaction of cycloalkenes with tetrazines.BDP TR is a multi-purpose borondipyrromethene dye for ROX/Texas Red channel, possessing excellent brightness.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | 2-[4-(2,2-difluoro-12-thiophen-2-yl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)phenoxy]-N-[[4-(6-methyl-1,2,4,5-tetrazin-3-yl)phenyl]methyl]acetamide |
| SMILES | [B-]1(N2C(=CC=C2C3=CC=CS3)C=C4[N+]1=C(C=C4)C5=CC=C(C=C5)OCC(=O)NCC6=CC=C(C=C6)C7=NN=C(N=N7)C)(F)F |
| InChI | InChI=1S/C31H24BF2N7O2S/c1-20-36-38-31(39-37-20)23-6-4-21(5-7-23)18-35-30(42)19-43-26-12-8-22(9-13-26)27-14-10-24-17-25-11-15-28(29-3-2-16-44-29)41(25)32(33,34)40(24)27/h2-17H,18-19H2,1H3,(H,35,42) |
| InChIKey | LJMVQPCJLWRFNA-UHFFFAOYSA-N |
| Solubility | good in DMF, DMSO, DCM |
| Appearance | violet crystals |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 60000 |
| Fluorescence Quantum Yield | 0.9 |
| Excitation | 589 |
| Emission | 616 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP TR tetrazine is a tetrazine-functional fluorescent reagent designed for fast, bioorthogonal tetrazine-trans-cyclooctene (TCO) click labeling workflows. In conjugation and molecular imaging development, it is used to introduce a red-emitting fluorophore tag onto biomolecules, affinity reagents, and targeting constructs that carry a complementary TCO handle. The reagent's practical value lies in enabling modular fluorescence labeling with minimal perturbation to the biological targeting moiety, supporting imaging and assay-readout development in chemical biology and biomaterials research.
1. Targeted Bioconjugation Labeling
BDP TR tetrazine is commonly used by chemical biology groups to fluorescently label antibodies, peptides, and other targeting ligands that have been pre-functionalized with a TCO group. Researchers use the resulting conjugates for fluorescence-based binding studies, cellular binding assays, and localization experiments where modular assembly is preferred over direct dye conjugation. The tetrazine click format helps streamline conjugate construction for probe libraries, enabling rapid swapping of targeting components while maintaining consistent fluorophore reporting for downstream microscopy and plate-reader workflows.
2. Fluorescence Microscopy Imaging Probes
BDP TR tetrazine supports fluorescence microscopy workflows in which researchers want to visualize specific biomolecular interactions using a click-assembled fluorophore tag. Typical use cases include staining of TCO-bearing cell-surface targets, labeling of engineered biomaterials with fluorescent reporters, and construction of imaging probes for time-resolved visualization of labeled components in fixed or prepared samples. The red-emitting output is leveraged to reduce spectral overlap in multicolor experiments, where careful fluorophore selection is important for image segmentation and channel separation.
3. Biomaterials And Surface Functionalization
BDP TR tetrazine is used in biomaterials science to fluorescently characterize and track TCO-functional surfaces, coatings, and scaffold materials. Teams developing hydrogels, polymer films, and nanoparticle surfaces use the reagent to incorporate a fluorescent reporter via tetrazine click chemistry, enabling visualization of surface coverage, distribution, and conjugate stability under experimental conditions. This application is especially relevant when researchers need a modular labeling step that can be performed after material assembly, supporting iterative optimization of functionalized biomaterials.
4. Modular Probe Library Construction
BDP TR tetrazine is frequently employed in probe development pipelines where a consistent fluorophore reporter is needed across multiple conjugates. By reacting with TCO-containing partners, researchers can generate a set of fluorescence-tagged constructs for comparative studies, including structure-labeling optimization, binding-competent probe screening, and method development for fluorescence readouts. This modular approach is particularly useful for building standardized reagents for microscopy and fluorescence assay development, where reproducible labeling chemistry and interchangeable targeting components accelerate iteration.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 10 |
| Rotatable Bond Count | 8 |
| Exact Mass | 607.1773307 g/mol |
| Monoisotopic Mass | 607.1773307 g/mol |
| Topological Polar Surface Area | 126Ų |
| Heavy Atom Count | 44 |
| Formal Charge | 0 |
| Complexity | 1150 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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