
BDP TMR DBCO
| Catalog Number | F01-0271 |
| Category | BODIPY |
| Molecular Formula | C42H41BF2N4O3 |
| Molecular Weight | 698.61 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP TMR is a bright high quantum yield fluorophore for the TAMRA channel.
Chemical Information
Product Specification
Application
Chemical Information
| IUPAC Name | N-[6-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-6-oxohexyl]-3-[2,2-difluoro-12-(4-methoxyphenyl)-4,6-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-5-yl]propanamide |
| SMILES | [B-]1(N2C(=CC=C2C3=CC=C(C=C3)OC)C=C4[N+]1=C(C(=C4C)CCC(=O)NCCCCCC(=O)N5CC6=CC=CC=C6C#CC7=CC=CC=C75)C)(F)F |
| InChI | InChI=1S/C42H41BF2N4O3/c1-29-37(30(2)48-40(29)27-35-20-24-39(49(35)43(48,44)45)33-18-21-36(52-3)22-19-33)23-25-41(50)46-26-10-4-5-15-42(51)47-28-34-13-7-6-11-31(34)16-17-32-12-8-9-14-38(32)47/h6-9,11-14,18-22,24,27H,4-5,10,15,23,25-26,28H2,1-3H3,(H,46,50) |
| InChIKey | SZKDRTCSUXEWOO-UHFFFAOYSA-N |
| Appearance | Red Powder With Luster |
Product Specification
| Excitation | 542 |
| Emission | 574 |
Application
BDP TMR DBCO is a DBCO-functionalized BDP-TMR fluorescent labeling reagent designed for strain-promoted azide-alkyne cycloaddition (SPAAC) workflows, enabling copper-free click conjugation to azide-bearing biomolecules and materials. The BDP-TMR fluorophore provides a bright red/orange emission channel for fluorescence imaging and quantitative assays, while the DBCO handle supports efficient attachment under bioconjugation conditions that are commonly used in chemical biology and biomaterials research.
1. Biomolecule Click Labeling
BDP TMR DBCO is used by chemical biology groups to fluorescently tag azide-modified proteins, peptides, and other biomolecules through copper-free click chemistry. Researchers incorporate the resulting BDP-TMR conjugates into binding studies, localization experiments, and labeling controls where a stable fluorescent readout is needed after conjugation. The DBCO functionality is particularly valued for workflows that avoid copper-related effects on sensitive biomolecules, supporting downstream microscopy and fluorescence-based quantification.
2. Fluorescent Probe Construction
BDP TMR DBCO is frequently employed in fluorescent probe development to generate imaging reagents and modular labeling building blocks. By clicking the reagent to azide-functional targeting ligands or scaffold components, teams create conjugated probes for cellular imaging, assay development, and multi-component staining strategies where the fluorophore must be introduced late in the probe assembly process. This approach supports rapid iteration of probe formats for microscopy and plate-based fluorescence readouts using azide-functional intermediates.
3. Biomaterial And Surface Functionalization
BDP TMR DBCO is applied in biomaterials science to label azide-functional surfaces, hydrogels, and polymer constructs with a fluorescent reporter. Materials researchers use the click-installed BDP-TMR signal to visualize coating uniformity, track material interactions in imaging experiments, and prepare fluorescently tagged scaffolds for cell-material studies. The SPAAC-compatible DBCO handle helps integrate labeling into material fabrication workflows without requiring copper catalysts, which is advantageous for preserving biomaterial integrity and compatibility with sensitive components.
4. Multicolor Imaging Controls
BDP TMR DBCO is also used to create consistent red/orange fluorescence labeling standards and experimental controls in multicolor microscopy and fluorescence assays. By generating azide-reactive conjugates with defined fluorophore placement via click chemistry, researchers can prepare reproducible reference samples for channel assignment, spectral spillover evaluation, and staining comparability across experiments. This is particularly useful when building panels of fluorescent conjugates that must be introduced through the same azide-based click logic.
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