
BDP R6G tetrazine
| Catalog Number | R08-0004 |
| Category | BODIPY |
| Molecular Formula | C28H24N7BF2O |
| Molecular Weight | 523.34 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP R6G is a borondipyrromethene dye that has absorption and emission wavelengths close to rhodamine 6G (R6G). BDP R6G is a very bright and photostable dye. Tetrazine fragment is used in inverse electron demand Diels Alder reaction with trans-cyclooctenes, acylazetines, and other strained olefins.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | 3-(2,2-difluoro-12-phenyl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)-N-[[4-(6-methyl-1,2,4,5-tetrazin-3-yl)phenyl]methyl]propanamide |
| SMILES | [B-]1(N2C(=CC=C2CCC(=O)NCC3=CC=C(C=C3)C4=NN=C(N=N4)C)C=C5[N+]1=C(C=C5)C6=CC=CC=C6)(F)F |
| InChI | InChI=1S/C28H24BF2N7O/c1-19-33-35-28(36-34-19)22-9-7-20(8-10-22)18-32-27(39)16-14-23-11-12-24-17-25-13-15-26(21-5-3-2-4-6-21)38(25)29(30,31)37(23)24/h2-13,15,17H,14,16,18H2,1H3,(H,32,39) |
| InChIKey | WJROXGNPGGCLQF-UHFFFAOYSA-N |
| Solubility | good in DMF, DMSO, DCM, poorly soluble in water |
| Appearance | orange to brown solid |
Product Specification
| Fluorescence Quantum Yield | 0.96 |
| Excitation | 530 |
| Emission | 548 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP R6G tetrazine is a tetrazine-functionalized fluorescent labeling reagent designed for fast, bioorthogonal tetrazine-trans-cyclooctene click chemistry. The BDP R6G fluorophore provides bright visible emission for tracking labeled biomolecules, while the tetrazine handle enables late-stage conjugation to TCO-functional partners used in chemical biology and imaging workflows. This reagent is commonly leveraged to build fluorescent conjugates, construct imaging probes, and label biomaterials with controlled stoichiometry under mild conditions.
1. Biomolecule Labeling
BDP R6G tetrazine is used by chemical biology and proteomics researchers to fluorescently label proteins, peptides, and other biomolecules that have been pre-functionalized with trans-cyclooctene (TCO). In typical workflows, TCO-bearing targets are reacted with the tetrazine dye to generate fluorescent conjugates for downstream microscopy, gel-based visualization, or qualitative imaging studies. The tetrazine click handle supports rapid conjugation, making it practical for time-sensitive labeling experiments where fluorescent readout is needed soon after mixing.
2. Fluorescence Microscopy Imaging
BDP R6G tetrazine is applied in fluorescence microscopy to visualize TCO-modified biological structures and engineered constructs after tetrazine-mediated labeling. Researchers use the dye to generate high-contrast fluorescent tagging for cellular imaging experiments, including labeling of biomolecule assemblies and surface-associated targets in lab-on-chip and biomaterials contexts. The strong visible fluorophore signal supports straightforward imaging with standard fluorescence microscope filter sets, enabling localization studies of conjugated components in fixed or processed samples.
3. Biomaterial And Surface Functionalization
BDP R6G tetrazine is used in materials science and biomaterials research to fluorescently functionalize hydrogels, nanoparticles, and other surfaces bearing TCO groups. By introducing the tetrazine dye onto TCO-functional materials, teams can map coating uniformity, track material distribution, and monitor conjugate incorporation using fluorescence imaging. This application is especially valuable for validating surface engineering steps and producing fluorescently traceable material systems for microscopy-based characterization and workflow development.
4. Fluorescent Probe Construction
BDP R6G tetrazine is incorporated into fluorescent probe development for constructing modular imaging reagents where a fluorophore must be installed onto a defined targeting scaffold. In many research settings, the tetrazine dye serves as the fluorescent "payload" that is coupled to TCO-functional probe backbones, affinity reagents, or targeting ligands. The resulting fluorescent conjugates are then used as molecular imaging reagents to support localization and labeling experiments in chemical biology, assay development, and instrument-based fluorescence readouts.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 8 |
| Rotatable Bond Count | 7 |
| Exact Mass | 523.2103449 g/mol |
| Monoisotopic Mass | 523.2103449 g/mol |
| Topological Polar Surface Area | 88.6Ų |
| Heavy Atom Count | 39 |
| Formal Charge | 0 |
| Complexity | 998 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
Recommended Services
Recommended Articles
- Hoechst Dyes: Definition, Structure, Mechanism and Applications
- Mastering the Spectrum: A Comprehensive Guide to Cy3 and Cy5 Dyes
- Fluorescent Probes: Definition, Structure, Types and Application
- Fluorescent Dyes: Definition, Mechanism, Types and Application
- Coumarin Dyes: Definition, Structure, Benefits, Synthesis and Uses
- Unlocking the Power of Fluorescence Imaging: A Comprehensive Guide
- Cell Imaging: Definitions, Systems, Protocols, Dyes, and Applications
- Lipid Staining: Definition, Principles, Methods, Dyes, and Uses
- Flow Cytometry: Definition, Principles, Protocols, Dyes, and Uses
- Nucleic Acid Staining: Definition, Principles, Dyes, Procedures, and Uses
Recommended Products
Online Inquiry