BDP R6G DBCO

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BDP R6G DBCO

BDP R6G DBCO

Catalog Number R09-0003
Category Cycloalkyne Dyes (DBCO)
Molecular Formula C39H35N4BF2O2
Molecular Weight 640.53
Catalog Number Size Price Quantity
R09-0003 -- $--

Product Introduction

BDP R6G is a bright and photostable substitute for Rhodamine 6G (R6G). BDP stands for borondipyrromethene, a versatile fluorophore scaffold that is specially tuned in this molecule to match absorption and emission of R6G.DBCO (azodibenzocyclooctyne) is a strained cyclic alkyne that reacts rapidly with azides giving rise to stable triazoles. The reaction does not require to use any catalyst; it is tolerant to most biologically important functional groups.

Chemical Information

Purity NMR 1H, HPLC-MS (95%)
IUPAC Name N-[6-(2-azatricyclo[10.4.0.04,9]hexadeca-1(16),4,6,8,12,14-hexaen-10-yn-2-yl)-6-oxohexyl]-3-(2,2-difluoro-12-phenyl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)propanamide
Canonical SMILES [B-]1(N2C(=CC=C2CCC(=O)NCCCCCC(=O)N3CC4=CC=CC=C4C#CC5=CC=CC=C53)C=C6[N+]1=C(C=C6)C7=CC=CC=C7)(F)F
InChI InChI=1S/C39H35BF2N4O2/c41-40(42)45-33(20-21-34(45)27-35-22-24-37(46(35)40)30-12-3-1-4-13-30)23-25-38(47)43-26-10-2-5-17-39(48)44-28-32-15-7-6-11-29(32)18-19-31-14-8-9-16-36(31)44/h1,3-4,6-9,11-16,20-22,24,27H,2,5,10,17,23,25-26,28H2,(H,43,47)
InChI Key IGGUTYGDIYZZDQ-UHFFFAOYSA-N
Solubility good in DMF, DMSO, DCM
Appearance red to brown solid
  • Product Specification
Fluorescence Quantum Yield 0.19
Excitation 530
Emission 548
Storage 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate.

Computed Properties

Hydrogen Bond Donor Count 1
Hydrogen Bond Acceptor Count 5
Rotatable Bond Count 10
Exact Mass 640.2821129 g/mol
Monoisotopic Mass 640.2821129 g/mol
Topological Polar Surface Area 57.4Ų
Heavy Atom Count 48
Formal Charge 0
Complexity 1370
Isotope Atom Count 0
Defined Atom Stereocenter Count 0
Undefined Atom Stereocenter Count 0
Defined Bond Stereocenter Count 0
Undefined Bond Stereocenter Count 0
Covalently-Bonded Unit Count 1
Compound Is Canonicalized Yes
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