
BDP 650/665 lipid stain
| Catalog Number | F01-0266 |
| Category | BODIPY |
| Molecular Formula | C25H22BF2N3O3 |
| Molecular Weight | 461.27 |
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Product Introduction
BDP 650/665 lipid stain is a derivative of the BDP 650/665 fluorophore and it is used for staining of lipids and lipophilic compounds.
Chemical Information
Product Specification
Application
Chemical Information
| IUPAC Name | ethyl 2-[4-[(E)-2-[2,2-difluoro-12-(1H-pyrrol-2-yl)-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl]ethenyl]phenoxy]acetate |
| SMILES | [B-]1(N2C(=CC=C2C=CC3=CC=C(C=C3)OCC(=O)OCC)C=C4[N+]1=C(C=C4)C5=CC=CN5)(F)F |
| InChI | InChI=1S/C25H22BF2N3O3/c1-2-33-25(32)17-34-22-12-6-18(7-13-22)5-8-19-9-10-20-16-21-11-14-24(23-4-3-15-29-23)31(21)26(27,28)30(19)20/h3-16,29H,2,17H2,1H3/b8-5+ |
| InChIKey | RJSOZYKZKBURCB-VMPITWQZSA-N |
| Solubility | Soluble in DMSO, dichloromethane |
| Appearance | Dark Glassy Solid |
Product Specification
| Excitation | 649 |
| Emission | 667 |
Application
BDP 650/665 lipid stain is a far-red fluorescent lipid labeling reagent designed for visualizing lipid-rich structures in fixed or prepared biological samples. Its BODIPY-based emission in the 650-665 nm range enables low-background fluorescence imaging when paired with appropriate far-red filter sets, making it a practical choice for fluorescence microscopy workflows focused on membrane-associated and lipid storage phenotypes. The stain's hydrophobic character supports incorporation into lipid environments, supporting downstream qualitative imaging and quantitative fluorescence readouts in microscopy and plate-based assays.
1. Lipid Droplet Imaging
BDP 650/665 lipid stain is used to label intracellular lipid droplets and other neutral lipid-rich compartments for fluorescence microscopy and image-based quantification. Researchers commonly apply it in cell biology workflows where lipid accumulation, lipid remodeling, or treatment-dependent changes in lipid storage are monitored using far-red channels to reduce spectral overlap with common green and orange fluorophores. The reagent's far-red emission helps preserve separation from many standard immunofluorescence labels, supporting multiplex staining strategies in cultured cells and fixed preparations.
2. Membrane Lipid Visualization
BDP 650/665 lipid stain supports visualization of membrane-associated lipid environments in prepared samples, including studies of lipid organization and membrane remodeling. In microscopy-based experiments, users typically incorporate the stain alongside structural markers to compare lipid-rich regions with cytoskeletal or organelle features while maintaining channel compatibility through its 650-665 nm spectral window. This makes the stain useful for generating consistent fluorescence contrast in imaging studies where lipid localization patterns are assessed across conditions.
3. Fluorescence Plate Assays
BDP 650/665 lipid stain is frequently incorporated into plate-based fluorescence assays for screening and monitoring lipid-related phenotypes, including lipid accumulation readouts in multiwell formats. Assay developers use its far-red signal to design robust plate workflows that minimize interference from autofluorescent background and from fluorophores used in parallel readouts. The stain's compatibility with standard fluorescence readers and imaging systems enables throughput-oriented analysis of lipid staining intensity across experimental panels.
4. Co-Localization Studies
BDP 650/665 lipid stain is used in co-localization experiments where lipid-rich compartments are compared with protein or organelle markers labeled in spectrally distinct channels. Cell imaging teams leverage the far-red emission to reduce crosstalk with common green/orange dyes, improving interpretability of overlap metrics in merged images. This positioning is especially valuable when researchers need consistent lipid signal for overlay analysis with immunostaining, lectin labeling, or organelle dyes in fixed-cell workflows.
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