
BDP 630/650 tetrazine
| Catalog Number | R08-0002 |
| Category | BODIPY |
| Molecular Formula | C33H26BF2N7O2S |
| Molecular Weight | 633.5 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP 630/650 is a borondipyrromethene dye with red emisssion. This fluorophore matches Cyanine5 channel that is often used when minimal background is desired. Tetrazines react with trans-cyclooctenes in an ultra fast reaction called TCO ligation.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| IUPAC Name | 2-[4-[(E)-2-(2,2-difluoro-12-thiophen-2-yl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)ethenyl]phenoxy]-N-[[4-(6-methyl-1,2,4,5-tetrazin-3-yl)phenyl]methyl]acetamide |
| SMILES | [B-]1(N2C(=CC=C2C=CC3=CC=C(C=C3)OCC(=O)NCC4=CC=C(C=C4)C5=NN=C(N=N5)C)C=C6[N+]1=C(C=C6)C7=CC=CS7)(F)F |
| InChI | InChI=1S/C33H26BF2N7O2S/c1-22-38-40-33(41-39-22)25-9-4-24(5-10-25)20-37-32(44)21-45-29-15-7-23(8-16-29)6-11-26-12-13-27-19-28-14-17-30(31-3-2-18-46-31)43(28)34(35,36)42(26)27/h2-19H,20-21H2,1H3,(H,37,44)/b11-6+ |
| InChIKey | CKHJZZWHYDJLEJ-IZZDOVSWSA-N |
Product Specification
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP 630/650 tetrazine is a tetrazine-based click chemistry reagent designed for rapid bioorthogonal labeling via inverse electron-demand Diels-Alder reactions. This fluorogenic/fluorescence-enabled tetrazine format is commonly used in chemical biology workflows where fast conjugation and imaging-compatible labeling are required, including the construction of fluorescent conjugates and labeling reagents for microscopy and related fluorescence readouts.
1. Live-Cell Click Labeling
BDP 630/650 tetrazine is used by chemical biology and imaging groups to label biomolecules and biomolecule-derived probes in workflows that rely on bioorthogonal click conjugation. Researchers typically incorporate tetrazine chemistry into experimental designs where a complementary strained alkene/alkyne partner is pre-installed on targets such as peptides, proteins, or other biomolecular handles, enabling rapid fluorescent tagging for cellular imaging. The 630/650 spectral region makes the reagent particularly relevant for fluorescence microscopy experiments that require robust red-orange channel separation from common green fluorophores, supporting multi-color experimental layouts.
2. Fluorescent Probe Construction
BDP 630/650 tetrazine is frequently employed in fluorescent probe development to generate defined fluorescent conjugates for downstream imaging and assay development. In research settings, teams use tetrazine click chemistry to assemble probe architectures where the fluorophore is introduced late in the workflow, improving flexibility for attaching the dye to targeting ligands, biomolecule scaffolds, or assay-compatible carriers. This approach is especially valuable when probe developers need consistent labeling chemistry and a reliable route to fluorescent conjugates suitable for fluorescence-based characterization, including imaging of labeled targets and reagent validation.
3. Biomolecule and Surface Labeling
BDP 630/650 tetrazine supports labeling of biomolecules and functional materials where tetrazine click conjugation is used to introduce fluorescent tags. In biomaterials and surface engineering workflows, researchers use tetrazine chemistry to create fluorescently readable materials by coupling fluorescent handles onto surfaces or onto biomaterial-associated components that carry the complementary click partner. This enables visualization of labeled coatings, tracking of functionalized biomaterial components, and fluorescence-based characterization of conjugation outcomes using standard fluorescence microscopy or plate-based fluorescence readouts.
4. Imaging-Based Assay Development
BDP 630/650 tetrazine is also used in fluorescence assay development where click-based labeling is integrated into experimental readouts. Assay developers incorporate tetrazine conjugation to generate fluorescent reporter conjugates for monitoring labeling events, reagent performance, or workflow progress in imaging-compatible formats. The reagent's red-shifted emission region supports assay designs that benefit from spectral separation, such as multiplexed fluorescence experiments where emissions in the 630/650 window help reduce channel overlap and simplify image-based quantification of labeled species.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 10 |
| Rotatable Bond Count | 9 |
| Exact Mass | 633.1929808 g/mol |
| Monoisotopic Mass | 633.1929808 g/mol |
| Topological Polar Surface Area | 126Ų |
| Heavy Atom Count | 46 |
| Formal Charge | 0 |
| Complexity | 1230 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 1 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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