
BDL-E5
| Catalog Number | F01-0258 |
| Category | BODIPY |
| Molecular Formula | C27H32BF3N4O3 |
| Molecular Weight | 528.38 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDL-E5 is a bodipy-derived fluorescent probe that can detect living human iPS cells at an early reprogramming stage. BDL-E5 can identify authentic reprogramming cells about 7 days before iPS colonies are formed and stained positive with conventional pluripotent markers.
Chemical Information
Product Specification
Application
Chemical Information
| Related CAS | 2261029-25-6 (rac-isomer) |
| IUPAC Name | (E)-3-(5,5-difluoro-7-(2-fluoro-4,5-dimethoxystyryl)-9-methyl-5H-4λ4,5λ4-dipyrrolo[1,2-c:2',1'-f][1,3,2]diazaborinin-3-yl)-N-(2-(dimethylamino)ethyl)propanamide |
| SMILES | O=C(NCCN(C)C)CCC=1C=CC2=CC3=C(C=C(C=CC=4C=C(OC)C(OC)=CC4F)[N-]3[B+3]([F-])([F-])[N]21)C |
| InChI | InChI=1S/C27H32BF3N4O3/c1-18-14-21(7-6-19-15-25(37-4)26(38-5)17-23(19)29)35-24(18)16-22-9-8-20(34(22)28(35,30)31)10-11-27(36)32-12-13-33(2)3/h6-9,14-17H,10-13H2,1-5H3,(H,32,36)/b7-6+ |
| InChIKey | WQIUVQCIDLVKGL-VOTSOKGWSA-N |
Product Specification
| Excitation | 578 nm |
| Emission | 599 nm |
Application
BDL-E5 is a fluorescent labeling reagent designed for constructing bright, trackable conjugates for fluorescence-based molecular imaging workflows. Its dye scaffold and reactive functionality enable incorporation into biological and biomaterial systems where optical readout is required, including microscopy and flow cytometry sample preparation. Researchers use BDL-E5 as a practical fluorophore component for generating labeled probes, affinity reagents, and staining tools that report localization or binding in complex mixtures.
1. Biomolecule Fluorescent Labeling
BDL-E5 is used by chemical biology and protein chemistry groups to prepare fluorescently labeled biomolecules for downstream imaging and binding studies. In typical workflows, researchers conjugate BDL-E5 to proteins, peptides, or other amine- or thiol-reactive biomolecule classes (depending on the lab's conjugation strategy) to create fluorescent tracking reagents for localization experiments, wash-based binding assays, and qualitative distribution mapping. The resulting conjugates are commonly evaluated on standard fluorescence microscopes and plate readers, supporting rapid visualization of labeling efficiency and spatial distribution in experimental samples.
2. Fluorescence Microscopy Staining
BDL-E5 supports fluorescence microscopy applications where researchers need a robust staining fluorophore for visualizing labeled targets in fixed preparations or prepared samples. Imaging teams use BDL-E5 to generate fluorescent staining reagents for cell-associated labeling, biomolecule localization, and multi-step sample workflows where the dye must remain detectable through typical staining and washing steps. Because BDL-E5 is designed as a reagent for optical readout, it is frequently incorporated into microscopy protocols that require consistent fluorescence signal for comparative imaging across experimental conditions, including co-localization studies with other fluorophores.
3. Flow Cytometry Sample Labeling
BDL-E5 is applied in flow cytometry workflows to generate fluorescently labeled reagents for population-level analysis of labeled biomolecules or binding events. Cytometry users incorporate BDL-E5 into labeling panels to track fluorescence from stained targets during acquisition, enabling gating strategies based on dye-positive populations and comparative analysis across samples. In practical assay development, BDL-E5 is also used during reagent screening and protocol optimization to confirm that labeling produces measurable fluorescence under the instrument's excitation/emission configuration used in the lab.
4. Fluorescent Probe Construction
BDL-E5 is frequently used as a fluorophore component for constructing custom fluorescent probes and imaging reagents used in assay development. Researchers employ BDL-E5 to build labeled probe formats such as affinity-based detection reagents, fluorescent conjugates for binding and localization studies, and biomaterial-associated reporters where optical readout is required. This reagent positioning is especially common in research groups that need a modular fluorescent tag for integrating into larger probe architectures, including conjugates used to monitor interactions in solution or on engineered surfaces.
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