
BDP FL amine | CAS 2183473-03-0
| Catalog Number | F01-0010 |
| Category | BODIPY |
| Molecular Formula | C20H30BClF2N4O |
| Molecular Weight | 426.74 |
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Product Introduction
Amino derivative of BDP FL dye, a borondipyrromethene dye for FAM channel. This reagent possesses good aqueous solubility.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Synonyms | 6-[3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)propanoylamino]hexylazanium;chloride |
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | 6-[3-(2,2-difluoro-10,12-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-4-yl)propanoylamino]hexylazanium;chloride |
| SMILES | [B-]1(N2C(=CC(=C2C=C3[N+]1=C(C=C3)CCC(=O)NCCCCCC[NH3+])C)C)(F)F.[Cl-] |
| InChI | InChI=1S/C20H29BF2N4O.ClH/c1-15-13-16(2)26-19(15)14-18-8-7-17(27(18)21(26,22)23)9-10-20(28)25-12-6-4-3-5-11-24;/h7-8,13-14H,3-6,9-12,24H2,1-2H3,(H,25,28);1H |
| InChIKey | YZXOISGBDDZJIU-UHFFFAOYSA-N |
| Solubility | good in DMSO, DMF, methanol, water, limited solubility in acetonitrile, insoluble in DCM |
| Appearance | orange solid |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 92000 |
| Fluorescence Quantum Yield | 0.97 |
| Excitation | 503 |
| Emission | 509 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP FL amine is a fluorescein-based fluorescent dye supplied with an amine functionality for straightforward conjugation into labeling workflows. In fluorescence imaging and labeling applications, its fluorescein emission profile supports common visible-channel detection for tracking biomolecules, polymers, and surfaces, while the amine handle enables coupling to activated carboxyl groups or incorporation into amine-reactive labeling strategies.
1. Fluorescent Protein Labeling
BDP FL amine is used by protein chemistry and chemical biology groups to generate fluorescently labeled proteins for microscopy, imaging assays, and binding studies. Researchers typically incorporate the dye into antibodies, enzymes, and protein scaffolds through amide-forming conjugation chemistry, producing conjugates that can be tracked in solution or after immobilization on assay surfaces. The amine functionality makes it convenient for building labeled reagents used in fluorescence readouts, including experiments where protein localization or binding kinetics are followed by fluorescence intensity.
2. Biomolecule Conjugation For Microscopy
BDP FL amine supports fluorescent labeling of peptides, nucleic-acid-associated constructs, and other biomolecules used in cellular and subcellular imaging workflows. In practice, investigators prepare dye-conjugated targeting or reporter constructs to visualize distribution in microscopy experiments, often leveraging the fluorescein spectral window for standard fluorescence microscopes with appropriate filter sets. The amine handle also facilitates integration into multicomponent labeling schemes, such as fluorescent tagging of biomolecule carriers and imaging reagents used to map interactions at membranes or within biological matrices.
3. Polymer And Surface Functionalization
BDP FL amine is applied in materials and biomaterials research to introduce a fluorescent tag into polymers, hydrogels, and surface coatings for visualization and traceability. Lab teams use the dye-modified materials as fluorescent reporters to monitor coating uniformity, diffusion, or material-associated localization in experimental systems where the labeled polymer or surface must be tracked by fluorescence. The amine functionality enables coupling into surface modification and polymer functionalization strategies that generate stable fluorescent materials for imaging-based characterization and assay development.
4. Fluorescent Tracing In Bioassays
BDP FL amine is commonly used to prepare fluorescent standards and tracer conjugates for fluorescence-based bioassays and assay development. Researchers incorporate the dye into labeled reagents that serve as readout components in binding assays, wash-step monitoring, and workflow validation experiments where fluorescence provides a quantitative or semi-quantitative signal. The dye's fluorescein emission behavior and amine functionality make it a practical building block for constructing assay reagents used in plate-based and cuvette-based fluorescence measurements.
Computed Properties
| Hydrogen Bond Donor Count | 2 |
| Hydrogen Bond Acceptor Count | 5 |
| Rotatable Bond Count | 9 |
| Exact Mass | 426.2169258 g/mol |
| Monoisotopic Mass | 426.2169258 g/mol |
| Topological Polar Surface Area | 64.7Ų |
| Heavy Atom Count | 29 |
| Formal Charge | 0 |
| Complexity | 692 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
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