
BDP 630/650 X NHS ester | CAS 2213445-35-1
| Catalog Number | R01-0007 |
| Category | BODIPY |
| Molecular Formula | C33H31N4BF2O6S |
| Molecular Weight | 660.5 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP 630/650 is a borondipyrromethene fluorophore that has a high molar extinction coefficient, excellent quantum yield, and a relatively long lifetime of the excited state. Due to it, this fluorophore is useful for fluorescence polarization assays that allow to detect binding between molecules. This is an amine reactive NHS ester. It contains an aminohexanoyl linker between the fluorophore and the reactive group.
Chemical Information
Product Specification
Application
Computed Properties
Patents
Chemical Information
| Related CAS | 380367-48-6 |
| Synonyms | BODIPY 630/650-X; BDY 630-X, SE; (2,5-dioxopyrrolidin-1-yl) 6-[[2-[4-[(E)-2-(2,2-difluoro-12-thiophen-2-yl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)ethenyl]phenoxy]acetyl]amino]hexanoate; 2,5-dioxopyrrolidin-1-yl (E)-6-(2-(4-(2-(5,5-difluoro-7-(thiophen-2-yl)-5H-4l4,5l4-dipyrrolo[1,2-c:2',1'-f][1,3,2]diazaborinin-3-yl)vinyl)phenoxy)acetamido)hexanoate; Succinimidyl-6-[2-(p-{(E)-2-[4,4-difluoro-5-(2-thienyl)-3a,4a-diaza-4-bora-s-indacen-3-yl]ethenyl}phenoxy)acetylamino]hexanoate; BODIPY 630/650X succinimide ester; BDP 630/650 NHS ester; (N-{6-[(2,5-dioxopyrrolidin-1-yl)oxy]-6-oxohexyl}-2-{4-[2-(2-{[5-(thiophen-2-yl)-1H-pyrrol-2-yl-kappaN]methylene}-2H-pyrrol-5-yl-kappaN)ethenyl]phenoxy}acetamidato)(difluoro)boron |
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | (2,5-dioxopyrrolidin-1-yl) 6-[[2-[4-[(E)-2-(2,2-difluoro-12-thiophen-2-yl-3-aza-1-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)ethenyl]phenoxy]acetyl]amino]hexanoate |
| SMILES | [B-]1(N2C(=CC=C2C=CC3=CC=C(C=C3)OCC(=O)NCCCCCC(=O)ON4C(=O)CCC4=O)C=C5[N+]1=C(C=C5)C6=CC=CS6)(F)F |
| InChI | InChI=1S/C33H31BF2N4O6S/c35-34(36)38-24(11-12-25(38)21-26-13-16-28(39(26)34)29-5-4-20-47-29)10-7-23-8-14-27(15-9-23)45-22-30(41)37-19-3-1-2-6-33(44)46-40-31(42)17-18-32(40)43/h4-5,7-16,20-21H,1-3,6,17-19,22H2,(H,37,41)/b10-7+ |
| InChIKey | TZBGLTNFAMQEEZ-JXMROGBWSA-N |
| Solubility | good in DMF, DMSO |
| Appearance | dark colored solid |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 97000 |
| Fluorescence Quantum Yield | 0.91 |
| Excitation | 628 |
| Emission | 642 |
Application
BDP 630/650 X NHS ester is a reactive fluorescent dye for covalent labeling of primary amines on proteins, peptides, and other amine-bearing biomolecules. As an NHS ester, it is commonly used to prepare fluorescent conjugates for fluorescence imaging and quantitative fluorescence workflows, with excitation/emission well matched to far-red detection channels. Researchers rely on its dye stability in labeling workflows to generate consistent conjugates for microscopy, assay development, and instrument-based readouts.
1. Protein And Antibody Labeling
BDP 630/650 X NHS ester is frequently used by protein chemistry and chemical biology groups to generate far-red fluorescently labeled proteins for downstream binding studies, imaging experiments, and fluorescence-based assays. The NHS ester reacts with lysine residues and N-termini to form stable amide linkages, enabling straightforward preparation of labeled antibodies, antibody fragments, enzymes, and affinity reagents. In practice, teams use the resulting conjugates to track biomolecule distribution, quantify binding in plate-based formats, or visualize labeled targets in fluorescence microscopy workflows that benefit from far-red spectral separation.
2. Fluorescence Microscopy Tracing
BDP 630/650 X NHS ester supports cellular and biomaterial imaging workflows where far-red fluorescence is advantageous for reducing spectral crosstalk and improving signal discrimination. Lab groups use the dye to label amine-containing components such as extracellular matrix proteins, cell-surface proteins, or probe-bearing carriers, then visualize localization patterns by fluorescence microscopy. Because the labeling is covalent, it is often selected for multi-step staining or wash-intensive imaging protocols where retention of fluorescence signal on the labeled biomolecule is important for consistent imaging across samples.
3. Flow Cytometry Labeling Reagents
BDP 630/650 X NHS ester is used to prepare fluorescent conjugates for flow cytometry and related cell analysis workflows when a far-red dye channel is desired. Immunology and cell biology laboratories commonly label amine-bearing proteins or targeting ligands to generate fluorescent reagents that can be incubated with cells and analyzed by flow cytometry. Covalent dye attachment helps maintain conjugate integrity during staining and washing steps, supporting reproducible staining intensity across experimental replicates and enabling quantitative comparisons of labeled biomolecule association with cell populations.
4. Fluorescent Conjugate Standards
BDP 630/650 X NHS ester is also employed in reagent development and assay standardization workflows to create far-red fluorescent conjugates for calibration, method validation, and instrument setup. Researchers and assay developers use the dye-labeled biomolecules as fluorescence references in plate readers and imaging systems, helping establish consistent measurement conditions across experiments. This application is particularly useful when far-red detection is required to align with existing optical filters or to support multiplex panels that separate the BDP 630/650 signal from other fluorophores.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 10 |
| Rotatable Bond Count | 14 |
| Exact Mass | 660.2025424 g/mol |
| Monoisotopic Mass | 660.2025424 g/mol |
| Topological Polar Surface Area | 138Ų |
| Heavy Atom Count | 47 |
| Formal Charge | 0 |
| Complexity | 1350 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 1 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
Patents
| Publication Number | Title | Priority Date |
|---|---|---|
| US-2021231552-A1 | Compositions and methods for cell-like calibration particles | 2020-01-24 |
| WO-2021150838-A1 | Compositions and methods for cell-like calibration particles | 2020-01-24 |
| US-11313782-B2 | Compositions and methods for cell-like calibration particles | 2020-01-24 |
| US-2022364976-A1 | Compositions and methods for cell-like calibration particles | 2020-01-24 |
| US-10076509-B2 | Nested particles and the use thereof for coordinated delvery of active agents | 2015-05-01 |
Recommended Services
Recommended Articles
- Hoechst Dyes: Definition, Structure, Mechanism and Applications
- Mastering the Spectrum: A Comprehensive Guide to Cy3 and Cy5 Dyes
- Fluorescent Probes: Definition, Structure, Types and Application
- Fluorescent Dyes: Definition, Mechanism, Types and Application
- Coumarin Dyes: Definition, Structure, Benefits, Synthesis and Uses
- Unlocking the Power of Fluorescence Imaging: A Comprehensive Guide
- Cell Imaging: Definitions, Systems, Protocols, Dyes, and Applications
- Lipid Staining: Definition, Principles, Methods, Dyes, and Uses
- Flow Cytometry: Definition, Principles, Protocols, Dyes, and Uses
- Nucleic Acid Staining: Definition, Principles, Dyes, Procedures, and Uses
Recommended Products
Online Inquiry