
BDP 630/650 azide | CAS 2183473-22-3
| Catalog Number | F01-0006 |
| Category | BODIPY |
| Molecular Formula | C26H23N6BF2O2S |
| Molecular Weight | 532.37 |
* Please be kindly noted products are not for therapeutic use. We do not sell to patients.
Product Introduction
BDP 630/650 azide is a bright and photostable dye azide for the far red region of the spectrum, for labeling using Click chemistry. This dye possesses a relatively long lifetime of the excited state, and can therefore be used for fluorescence polarization experiments.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Synonyms | N-(3-azidopropyl)-2-[4-[(E)-2-(2-fluoro-12-thiophen-2-yl-3-aza-1-azonia-2-boratricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)ethenyl]phenoxy]acetamide;fluoride |
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | N-(3-azidopropyl)-2-[4-[(E)-2-(2-fluoro-12-thiophen-2-yl-3-aza-1-azonia-2-boratricyclo[7.3.0.03,7]dodeca-1(12),4,6,8,10-pentaen-4-yl)ethenyl]phenoxy]acetamide;fluoride |
| SMILES | B1(N2C(=CC=C2C=CC3=CC=C(C=C3)OCC(=O)NCCCN=[N+]=[N-])C=C4[N+]1=C(C=C4)C5=CC=CS5)F.[F-] |
| InChI | InChI=1S/C26H22BFN6O2S.FH/c28-27-33-20(8-9-21(33)17-22-10-13-24(34(22)27)25-3-1-16-37-25)7-4-19-5-11-23(12-6-19)36-18-26(35)30-14-2-15-31-32-29;/h1,3-13,16-17H,2,14-15,18H2;1H/b7-4+; |
| InChIKey | DZAURSRDUGCJIN-KQGICBIGSA-N |
| Solubility | good in DMSO, DMF, acetonitrile, DCM |
| Appearance | dark colored powder |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 97000 |
| Fluorescence Quantum Yield | 0.91 |
| Excitation | 628 |
| Emission | 642 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP 630/650 azide is a fluorescent azide building block designed for strain-promoted and copper-free click labeling workflows that connect BDP (boron-dipyrromethene) fluorophores to biomolecules, polymers, and surfaces. With a red spectral output in the 630-650 nm region, this reagent is commonly used to generate bright, photostable conjugates for fluorescence microscopy and quantitative fluorescence readouts, including labeling strategies that benefit from azide-compatible click handles.
1. Biomolecule Click Labeling
BDP 630/650 azide is used as an azide-functional fluorophore for labeling proteins, peptides, and other biomolecular targets that carry complementary cyclooctyne/alkyne click partners. Researchers employ the resulting fluorescent conjugates in fluorescence imaging and binding studies where a far-red emitting dye helps reduce background from common green/yellow autofluorescence. This reagent is particularly useful in workflows that require modular conjugate construction, such as preparing fluorescent affinity reagents, labeling ligands for target-binding assays, or generating fluorescent standards for assay development.
2. Fluorescence Microscopy Imaging
BDP 630/650 azide supports cellular and subcellular fluorescence imaging when incorporated into click-constructed labeling probes for fixed-cell or microscopy sample preparation workflows. Investigators use the far-red emission of BDP dyes to visualize labeled biomolecules with improved spectral separation from many endogenous signals and from commonly used counterstains. In practice, the azide handle enables straightforward dye installation onto targeting constructs, enabling consistent probe generation for microscopy experiments that compare localization patterns across conditions.
3. Polymer And Surface Functionalization
BDP 630/650 azide is widely used to introduce a fluorescent tag into polymer materials and biomaterial surfaces through click-compatible coupling to cyclooctyne-functional substrates. Materials scientists and chemical biologists use the resulting labeled polymers for tracking material distribution, studying surface interactions, and developing fluorescent coatings for imaging-based characterization. The azide functionality supports flexible post-functionalization of surfaces and bulk materials, allowing researchers to tune where the fluorophore is installed without redesigning the underlying material chemistry.
4. Fluorescence Assay Probe Construction
BDP 630/650 azide is employed in fluorescence assay development to construct labeled detection reagents and assay components that require a red-emitting fluorophore for robust signal reporting. Assay developers use the azide handle to generate conjugates for fluorescence-based binding assays, labeling controls, and calibration materials where a 630-650 nm emission window is advantageous for multiplexing with other fluorophores. This reagent's click-ready design helps streamline the preparation of fluorescent assay reagents from modular building blocks, supporting reproducible probe generation for routine assay workflows.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 7 |
| Rotatable Bond Count | 10 |
| Exact Mass | 532.1664317 g/mol |
| Monoisotopic Mass | 532.1664317 g/mol |
| Topological Polar Surface Area | 88.9Ų |
| Heavy Atom Count | 38 |
| Formal Charge | 0 |
| Complexity | 1020 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 1 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 2 |
| Compound Is Canonicalized | Yes |
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