
Sulfo-Cyanine3 amine | CAS 2183440-43-7
| Catalog Number | F03-0001 |
| Category | sulfo-Cyanine3 |
| Molecular Formula | C36H50N4O7S2 |
| Molecular Weight | 714.94 |
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Product Introduction
Sulfo-Cyanine3 amine is a water-soluble fluorescent dye belonging to the cyanine dye family, characterized by its extended conjugated aromatic system that facilitates strong absorption and emission in the visible spectrum. This compound features a primary amine group, enabling facile conjugation with carboxylic acids or activated esters, making it suitable for labeling peptides, proteins, or oligonucleotides. Sulfo-Cyanine3 amine is often utilized as a fluorescent probe in fluorescence microscopy and flow cytometry, providing reliable performance in bioimaging applications due to its bright fluorescence and photostability.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Synonyms | 1-[6-(6-azaniumylhexylamino)-6-oxohexyl]-3,3-dimethyl-2-[3-(1,3,3-trimethyl-5-sulfonatoindol-1-ium-2-yl)prop-2-enylidene]indole-5-sulfonate |
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | 1-[6-(6-azaniumylhexylamino)-6-oxohexyl]-3,3-dimethyl-2-[3-(1,3,3-trimethyl-5-sulfonatoindol-1-ium-2-yl)prop-2-enylidene]indole-5-sulfonate |
| SMILES | CC1(C2=C(C=CC(=C2)S(=O)(=O)[O-])[N+](=C1C=CC=C3C(C4=C(N3CCCCCC(=O)NCCCCCC[NH3+])C=CC(=C4)S(=O)(=O)[O-])(C)C)C)C |
| InChI | InChI=1S/C36H50N4O7S2/c1-35(2)28-24-26(48(42,43)44)17-19-30(28)39(5)32(35)14-13-15-33-36(3,4)29-25-27(49(45,46)47)18-20-31(29)40(33)23-12-8-9-16-34(41)38-22-11-7-6-10-21-37/h13-15,17-20,24-25H,6-12,16,21-23,37H2,1-5H3,(H2-,38,41,42,43,44,45,46,47) |
| InChIKey | ZVOZJQQPUBRDRD-UHFFFAOYSA-N |
| Solubility | well soluble in water (0.49 M = 350 g/L), alcohols, DMSO, DMF |
| Appearance | dark red solid |
Product Specification
| ε, L⋅mol-1⋅cm-1 | 162000 |
| Fluorescence Quantum Yield | 0.1 |
| Excitation | 548 |
| Emission | 563 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
Sulfo-Cyanine3 amine is a water-soluble cyanine dye featuring an amine-reactive handle for fluorescent labeling workflows. Its sulfonated structure supports aqueous conjugation and imaging compatibility, while the cyanine emission profile makes it useful for fluorescence microscopy and fluorescence-based readouts in labeling, tracking, and assay development. In practice, the reactive amine functionality enables preparation of fluorescent conjugates for biomolecule staining and probe construction.
1. Protein And Antibody Labeling
Sulfo-Cyanine3 amine is used by researchers to generate cyanine-labeled proteins and antibody conjugates for fluorescence imaging and fluorescence assay development. The amine-reactive functionality supports coupling to primary amine groups on lysine-containing biomolecules, enabling preparation of labeled reagents for binding studies, immunofluorescence workflows, and fluorescence-based quantification of biomolecular interactions. Because the dye is sulfonated, conjugates are often handled in aqueous buffers commonly used for labeling and downstream assay steps.
2. Fluorescence Microscopy Staining
Sulfo-Cyanine3 amine is frequently selected for fluorescence microscopy staining and cellular imaging reagent development where a bright red-emitting cyanine reporter is desired. In typical workflows, the dye is conjugated to targeting or affinity reagents (such as proteins or other amine-bearing biomolecules) to visualize binding and localization patterns on prepared samples. The aqueous character of the dye helps streamline conjugate preparation and use in microscopy buffer systems, supporting consistent staining and imaging across experimental sets.
3. Flow Cytometry Fluorescent Conjugates
Sulfo-Cyanine3 amine is applied in flow cytometry workflows that rely on stable fluorescent conjugates for labeling biomolecules and tracking binding events in suspension. Conjugated reagents prepared from Sulfo-Cyanine3 amine are used to tag amine-containing antibodies or proteins, enabling fluorescence readout of reagent binding to cells or biomolecular targets in assay development and analytical characterization. The dye's sulfonated, water-compatible nature supports preparation of conjugates for routine instrument workflows where aqueous staining buffers are standard.
4. Fluorescent Probe Construction
Sulfo-Cyanine3 amine is also used as a building-block dye for constructing fluorescent probes and labeled assay reagents, including secondary labeling reagents and multicomponent imaging tools. By attaching the dye to amine-bearing components, teams can create custom fluorescent conjugates for multiplex visualization strategies and fluorescence-based monitoring in biochemical workflows. This makes Sulfo-Cyanine3 amine a practical choice for laboratories developing in-house fluorescent reagents for microscopy, imaging assays, and fluorescence detection platforms.
Computed Properties
| XLogP3 | 1.5 |
| Hydrogen Bond Donor Count | 2 |
| Hydrogen Bond Acceptor Count | 8 |
| Rotatable Bond Count | 14 |
| Exact Mass | 714.31209229 g/mol |
| Monoisotopic Mass | 714.31209229 g/mol |
| Topological Polar Surface Area | 194Ų |
| Heavy Atom Count | 49 |
| Formal Charge | 0 |
| Complexity | 1450 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 2 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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