Cyanine3.5 azide | CAS 3077081-53-6

Cyanine3.5 azide is a cyanine-family azide-bearing fluorescent labeling reagent designed for click chemistry workflows, enabling efficient attachment of the dye to biomolecules, targeting ligands, and polymer or surface platforms. With its red-shifted cyanine emission profile and azide handle, Cyanine3.5 azide is commonly used to build fluorescent conjugates for fluorescence imaging, microscopy, and assay development where robust labeling and spectral compatibility with common fluorescence instrumentation are required.

1. Biomolecule Labeling

Cyanine3.5 azide is used by chemical biology and biomaterials laboratories to fluorescently tag proteins, peptides, and other biomolecules through azide-based bioconjugation. Researchers typically incorporate it into labeling strategies that follow copper-free or copper-catalyzed click formats to generate dye-labeled conjugates for tracking binding interactions, mapping biomolecular assemblies, and visualizing labeled targets in fluorescence microscopy workflows. The cyanine dye scaffold provides strong fluorescence for downstream imaging readouts, while the azide functionality enables modular attachment to targeting moieties and affinity reagents during probe construction.

2. Fluorescent Probe Construction

Cyanine3.5 azide is frequently employed in fluorescent probe development to create modular imaging reagents where the dye is installed onto a probe scaffold or recognition element via click-compatible coupling. In practice, teams in diagnostics development, molecular imaging, and assay chemistry use the azide handle to assemble fluorescent probes for localization studies, reagent screening, and platform-specific imaging assays. The resulting cyanine-labeled probes are leveraged for monitoring labeled components in heterogeneous assay formats, including workflows where conjugate preparation needs to be flexible and reproducible across different labeling targets.

3. Surface And Polymer Functionalization

Cyanine3.5 azide supports fluorescent labeling of materials by enabling dye incorporation onto azide-reactive surfaces and polymeric systems through click chemistry. Biomaterials groups use the dye-functionalized materials to visualize coating uniformity, track surface-associated processes, and generate fluorescent reporters for material characterization. Because Cyanine3.5 azide provides a defined reactive handle, it is also used to build fluorescently tagged polymer conjugates and composite materials used in microscopy-based studies of biomaterial interfaces and labeled material distribution.