
QSY7 NHS
| Catalog Number | A20-0029 |
| Category | QSY |
| Molecular Formula | C43H39ClN4O7S |
| Molecular Weight | 791.32 |
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Product Introduction
QXY7 has a broad and intense absorption at ~550 nm maxima with no detectable fluorescence, making it useful as an acceptor in fluorescence resonance energy transfer (FRET) applications paring with Cy3, TAMRA, Alexa Fluor 555 and iFluor 647 or other spectrally similar fluorescent dyes. QXY7 NHS ester is quite stable and readily reacts with amino-containing molecules such as amino-modified oligos, proteins and peptides.
Chemical Information
Application
Chemical Information
| Synonyms | QSY-7 acid NHS; QSY7 succinimidyl ester; SY-7 NHS ester; N-(9-{2-[(4-{[(2,5-dioxopyrrolidin-1-yl)oxy]carbonyl}piperidin-1-yl)sulfonyl]phenyl}-6-[methyl(phenyl)amino]-3H-xanthen-3-ylidene)-N-methylanilinium chloride |
| IUPAC Name | [9-[2-[4-(2,5-dioxopyrrolidin-1-yl)oxycarbonylpiperidin-1-yl]sulfonylphenyl]-6-(N-methylanilino)xanthen-3-ylidene]-methyl-phenylazanium;chloride |
| SMILES | CN(C1=CC=CC=C1)C2=CC3=C(C=C2)C(=C4C=CC(=[N+](C)C5=CC=CC=C5)C=C4O3)C6=CC=CC=C6S(=O)(=O)N7CCC(CC7)C(=O)ON8C(=O)CCC8=O.[Cl-] |
| InChI | InChI=1S/C43H39N4O7S.ClH/c1-44(30-11-5-3-6-12-30)32-17-19-34-37(27-32)53-38-28-33(45(2)31-13-7-4-8-14-31)18-20-35(38)42(34)36-15-9-10-16-39(36)55(51,52)46-25-23-29(24-26-46)43(50)54-47-40(48)21-22-41(47)49;/h3-20,27-29H,21-26H2,1-2H3;1H/q+1;/p-1 |
| InChIKey | BDJDTKYGKHEMFF-UHFFFAOYSA-M |
Application
QSY7 NHS is an NHS-ester activated quencher designed for covalent conjugation to primary amines on proteins, peptides, and other amine-containing biomolecules. Its quencher functionality supports fluorescence signal suppression in labeling and probe formats where background reduction or controlled fluorescence output is required, and the NHS-ester enables straightforward attachment under standard bioconjugation conditions.
1. Protein Conjugate Quenching
QSY7 NHS is widely used to prepare quencher-labeled proteins and protein conjugates for fluorescence-based assays and molecular imaging reagent development. Researchers attach the NHS-ester to lysine residues on antibodies, enzymes, or carrier proteins to create quenched conjugates that reduce unwanted fluorescence from dye tags. These materials are commonly incorporated into assay workflows where quenched donor-acceptor behavior, reduced background, or controlled readout from fluorescent labels is needed.
2. FRET Pair Signal Control
QSY7 NHS is used to build FRET-based systems in which a fluorescent donor is paired with a quencher to manage fluorescence output. In these constructs, the NHS-ester provides a practical route to install the quencher on biomolecular scaffolds such as peptides, enzyme substrates, or labeled binding reagents, enabling distance- and environment-dependent fluorescence behavior in assay designs. Fluorescence readouts from donor dyes are then modulated by the presence of the QSY7 quencher, supporting probe construction for fluorescence monitoring and signal suppression strategies.
3. Oligonucleotide and Probe Labeling
QSY7 NHS is employed in fluorescence probe development where quencher installation is required on amine-modified oligonucleotides or nucleic-acid-binding constructs. By reacting with primary amines introduced on modified nucleic acids or nucleic-acid-associated proteins, the quencher can be positioned to suppress donor fluorescence in hybridization- or binding-dependent probe formats. This approach is commonly used in molecular biology workflows that rely on fluorescence changes to report nucleic acid interactions while minimizing background signal from fluorophores.
4. Fluorescent Assay Background Reduction
QSY7 NHS supports fluorescence assay reagent development by enabling covalent attachment of a quencher to fluorescent labeling components used in plate-based and cuvette-based measurements. In these applications, quencher conjugation helps reduce residual fluorescence from dye-tagged reagents and supports cleaner signal interpretation when multiple fluorescent components are present. Typical users include assay development groups working with labeled biomolecules, affinity reagents, and multicomponent fluorescence assays where controlling background is essential for robust experimental readout.
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