
BDP TMR carboxylic acid
| Catalog Number | F01-0020 |
| Category | BODIPY |
| Molecular Formula | C21H21BF2N2O3 |
| Molecular Weight | 398.21 |
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Product Introduction
BDP TMR carboxylic acid is a fluorescent dye belonging to the BODIPY (boron-dipyrromethene) class, known for its strong absorption and high fluorescence quantum yield. It features a carboxylic acid functional group, enabling covalent conjugation to amine-containing biomolecules through amide bond formation, making it suitable for labeling proteins, peptides, and other amine-containing compounds. The dye exhibits excitation and emission in the visible spectrum, making it an effective reporter molecule in fluorescence microscopy, flow cytometry, and various fluorescence-based assays.
Chemical Information
Product Specification
Application
Computed Properties
Chemical Information
| Purity | NMR 1H, HPLC-MS (95%) |
| IUPAC Name | 3-[2,2-difluoro-12-(4-methoxyphenyl)-4,6-dimethyl-1-aza-3-azonia-2-boranuidatricyclo[7.3.0.03,7]dodeca-3,5,7,9,11-pentaen-5-yl]propanoic acid |
| SMILES | [B-]1(N2C(=CC=C2C3=CC=C(C=C3)OC)C=C4[N+]1=C(C(=C4C)CCC(=O)O)C)(F)F |
| InChI | InChI=1S/C21H21BF2N2O3/c1-13-18(9-11-21(27)28)14(2)25-20(13)12-16-6-10-19(26(16)22(25,23)24)15-4-7-17(29-3)8-5-15/h4-8,10,12H,9,11H2,1-3H3,(H,27,28) |
| InChIKey | XNXZTGCQHQKUMJ-UHFFFAOYSA-N |
| Solubility | good in alcohols, DMSO, DMF |
| Appearance | dark green-black crystals |
Product Specification
| Fluorescence Quantum Yield | 0.95 |
| Excitation | 545 |
| Emission | 570 |
| Storage | 24 months after receival at -20°C in the dark. Transportation: at room temperature for up to 3 weeks. Avoid prolonged exposure to light. Desiccate. |
Application
BDP TMR carboxylic acid is a tetramethylrhodamine (TMR)-based fluorescent dye supplied as a carboxylic acid for covalent labeling workflows. Its activated ester or carbodiimide-based coupling chemistry is commonly used to attach the fluorophore to amine-containing biomolecules, enabling bright red fluorescence for microscopy and fluorescence readouts. Because the dye is designed for stable conjugate formation, it is frequently selected when researchers need reliable labeling for tracking and quantification in chemical biology and imaging experiments.
1. Protein And Antibody Labeling
BDP TMR carboxylic acid is used to prepare fluorescent protein conjugates for immunoassays, binding studies, and fluorescence imaging of biomolecular interactions. Researchers typically couple the dye to primary amines on antibodies, enzymes, or carrier proteins to generate labeling reagents that report localization or binding via TMR fluorescence. This labeling strategy is especially common in workflows where a red-emitting dye is preferred for multiplexing or for reducing spectral overlap with green channels, and where covalent attachment is required for consistent signal during washing and analysis.
2. Fluorescence Microscopy Tracing
BDP TMR carboxylic acid supports cellular and biomaterial imaging experiments that rely on stable fluorescent tagging of macromolecules and probes. In microscopy workflows, the dye is commonly incorporated into labeled proteins, peptides, or other amine-containing constructs used to trace distribution, uptake, or surface association on cells and in extracellular matrices. The carboxylic acid handle enables conjugate preparation that can be integrated into staining and labeling protocols for confocal and widefield imaging, where red fluorescence facilitates visualization alongside other fluorophores.
3. Flow Cytometry Label Preparation
BDP TMR carboxylic acid is frequently used to generate fluorescent conjugates for flow cytometry sample staining and quantitative fluorescence analysis. By coupling the dye to antibodies or other amine-bearing targeting reagents, researchers create red fluorescent labeling reagents that can be used to measure binding to cell-surface or associated biomolecules in suspension. This approach is widely adopted in assay development and phenotyping experiments where covalent dye conjugates are needed to maintain signal through staining, washing, and instrument acquisition.
4. Biomaterial Surface Functionalization
BDP TMR carboxylic acid is applied in biomaterials research to fluorescently label surfaces and coatings for imaging-guided material characterization. After conjugate formation to appropriate amine-functional polymers or linkers, the TMR dye enables visualization of coating uniformity, adsorption behavior, and spatial distribution of functional biomolecules on surfaces and scaffolds. Materials scientists also use these labeled constructs to support fluorescence-based readouts in studies of biomolecule immobilization and surface chemistry optimization, where tracking the labeled component is essential.
Computed Properties
| Hydrogen Bond Donor Count | 1 |
| Hydrogen Bond Acceptor Count | 6 |
| Rotatable Bond Count | 5 |
| Exact Mass | 398.1613290 g/mol |
| Monoisotopic Mass | 398.1613290 g/mol |
| Topological Polar Surface Area | 54.5Ų |
| Heavy Atom Count | 29 |
| Formal Charge | 0 |
| Complexity | 800 |
| Isotope Atom Count | 0 |
| Defined Atom Stereocenter Count | 0 |
| Undefined Atom Stereocenter Count | 0 |
| Defined Bond Stereocenter Count | 0 |
| Undefined Bond Stereocenter Count | 0 |
| Covalently-Bonded Unit Count | 1 |
| Compound Is Canonicalized | Yes |
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